Program blastn blastp blastx tblastn tblastx Database CEST_trimmed CEST_virus CEST_fungus CEST_nr CP_454_contigs jgiEST_cluster CpEST Bao Cp 8x Cp 8x mitochon CP_main_genome_contigs CP_mitochon_contigs C.hypovirus1_genome C.hypovirus1_genome - Euro7 C.hypovirus1_genome - EP721 C.hypovirus2_genome C.hypovirus3_genome C.hypovirus4_genome EP146_454 Narna_virus - NB631 Mycoreovirus - Cp9B21 All the Above
Enter sequence below in FASTA format > lcl|CEST-35-B-01 No definition line found CCACGCGTCCGGCGAAGGGTCTTGTTCCTCGGGACAGCACGTTTGCTGGACATTCGCTGGGCGAGTATAGTGCCCTTGCT GCATTGGCCGAGGTTATGCCCATTGAGTCTCTGGTCTCGGTCGTCTTCTACCGTGGTCTGACAATGCAAGTGGCCGTCGA GCGCGATGAGGCTGGCCGATCTAACTACTCTATGTGTGCCGTCAACCCGAGCAGGATTTCTAAGACGTTCAACGAGGACG CGCTGCGCTTCGTGGTGGCCAACATTGCCGAGTCCACGGGCTGGCTCCTGGAGATTGTCAACTTCAACATCGCCAACATG CAATACGTGTGCGCGGGTGACCTGCGGGCCCTCGACACCCTCGGCTACGTCTGTAACTTCCTGAAGGTACAGAAGATCGA CATCGATAAGATGATGAAGGAGCTCTCGATCGACGAGGTGAAGGAGCATCTGCTGCAGATTATCAAGCAGGCTGCGTCGG AGACGCAGAAGAAGCCCGAGCCCCTGGAGCTGGAGAGGGGCTTTGCCACGATCCCCCTGAAGGGTATCGACGTGCCTTTC CACTCGACGTTCCTGCGCAGTGGTGTCAAGCCTTTCCGCTCGTTCTTGCTGAAGAGGATCAACAAGACGACCATCGACCC GTCCAAGCTGGTGGGCC Or load it from disk
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
