CAMEL logo Computational and Analytical Molecular Evolution Lab at CARB Nexplorer
People Publications Software Opportunities Links Internal

Links to Evolution and Computational Biology resources

Sorry! This page is way, way out of date! Please bear with us. We will begin fixing things up early in 2006!

  • Research relating to the origin and evolution of introns
  • Bioinformatics and computational biology links
  • Funding opportunities in bioinformatics and computational biology
  • Published work on the evolution of complex biochemical systems (John Catalano)

    Research relating to the origin and evolution of introns

    Researchers who study the evolution of introns & intron-containing genes

    Researchers who study splicing and splicing signals

    Databases and data summaries relating to introns, splicing, exon shuffling, etc.

    Miscellaneous


    Arlin's computational biol., bioinfo., mol. evol. links

    Computational biology, bioinformatics, etc.


    This page was missing alot even before it started to get out of date. Please help me update and expand this cite by writing to
    me with your links (preferably a line of HTML ready for inclusion in a file).

    This page is mostly to assemble resources and information for quantitative research in molecular evolution, for other types of computational evolutionary research, and for development of bioinformatics tools. If what you really want are links to specific databases, genome projects, servers, and popular end-user bioinformatics software, use a web search engine, or start with one of these pages:


    General pages with email directories or many relevant links

    Departments and programs

    People and projects

    Research in the areas of molecular evolution, population & evolutionary genetics, mathematical biology

    Bioinformatics research (R & D of database systems and algorithms for alignment, phylogeny, pattern-finding)

    Evolutionary computation, AI, A-life, chaoplexity research

    Sources of software, code libraries, other programming resources

    Education-- course outlines, manuals, howto documents, software to aid teaching

    Financial support

    Conferences, workshops, symposia

    Professional societies and journals


    [an error occurred while processing this directive]
    Published works on Biochemical Evolution

    Some Published works on Biochemical Evolution

    edited by John Catalano


    On page 179 of Darwin's Black Box Michael Behe claims:

    ""There has never been a meeting, or a book, or a paper on details of the evolution of complex biochemical systems."

    He closes the chapter with this ludicrous statement:

    "In effect, the theory of Darwinian molecular evolution has not published, and so it should perish"

    (Did someone say publish or perish?: The Elusive Scientific Basis of Intelligent Design Theory)

    To be honest, I suspect that the extent of detail Behe is demanding would require a combination cutting-edge biochemistry lab and a time machine. How else can science fully recover, for example, every single step in the evolution of the bacterial flagellum that took place billions of years ago?

    In any case the claim itself is false since papers do in fact exist that attempt to flesh out the details of the evolution of various biochemical systems and structures. Many such citations are included below.

    But that is only part of the story. There are thousands of additional published papers containing solid and detailed evidence of biochemical evolution:

    Most of the citations and abstracts below were found using the PubMed MEDLINE search engine and microbiology database. A simple search reveals that there are over 13,000 articles that contain "evolution" as a major subject keyword - hardly the dead silence that Behe proclaims. Granted many of these do not directly address the problem of adaptive complexity in biochemical systems, but many of them do.

    Note that I have excluded papers that discuss sequence comparisons being used solely to determine lines of descent. Michael Behe already admits that common descent is reasonable.

    Keep in mind this is only a small sampling of citations collected from my own searches, and from the suggestion of others (thanks for those suggestions!)

    Last but not least. Please help me find more citations and continue to grow this page - especially if you have a background in biochemistry or microbiology. Thank you.


    Books new.gif (158 bytes)

    Immune System

    Blood Coagulation

    Globin

    Flagella and Cilium

    Actin

    Cell Membrane - Receptors, Pumps, etc.

    Citric Acid Cycle (Krebs Cycle)

    Amino Acid Biosynthesis

    Gylcolysis

    Photosynthesis

    Lysozome

    Vision

    Development

    Transcription / Translation / Duplication

    From Russell F. Doolittle

    Other

    General

    Someone say Intelligent?

    Cancer as Molecular Evolution

    Test Tube and Artificial Evolution

    Origin of Life and Cells

    (major MeSH 1998 Jan-May)


    Return to "Behe's Empty Box"

    Home

    comments or questions to John Catalano catalj@spacelab.net