#NEXUS BEGIN DATA; DIMENSIONS NTAX=32 NCHAR=2147; [!These ribosomal sequences are those used in: Lake, J.A. 1988. Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences. Nature, 331:184-186. Thanks to James Lake for supplying these data, March 1990. The two trees in the file are the most parsimonious trees found. ] FORMAT DATATYPE=DNA MISSING=? GAP=- INTERLEAVE ;OPTIONS MSTAXA=UNCERTAIN IGNORE=UNINFORM ; MATRIX [ 10 20 30 40 50 60 70 80 90 100] [ . . . . . . . . . .] Homo_sapiens --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACC-CGGGGAGGTAGTGACGAAAA [77] Rattus_norvegicus --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACC-CGGGGAGGTAGTGACGAAAA [77] Xenopus_laevis --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACG-CGGGGAGGTAGTGACGAAAA [77] A._salina --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----AGCA-CGGGGAGGTAGTGACGAAAA [77] S._cerevisiae --------TAT-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----AATT-CAGGGAGGTAGTGACAATAA [78] P.MICA ---------AT-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----GACA-CAGGGAGGTAGTGACAAGAA [77] D.DISC --------TAA-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACTCAATCCC-----AATA-CGGGGAAGTAGTGACAATAA [78] T.BRUC --------GAT-----CTGGTTGATTCTGCC---AGTAGTCATATGCTTGTTTCAAGGATGCCCAATGTCGAAAAAATA-CGATGAGGCAGCGAAAAGAA [83] E.GRAC --------AAT-----CTGGTTGATCCTGCC---AGCAGTCATATGCTTTGTTCAAGGGTGCCCCATGCA-AAGACACT-CTGTGAGGCAGCGACGAACA [82] Zea_mays --------TAC-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----GACA-CGGGGAGGTAGTGACAATAA [78] D._mobilis ------TAACT-----CCGGTTGATCCTGCC---GGTCCCGACCGCTATCGGGGTGGGGTCCGCAATGCG-----GGAAACCGTGACGGGGCCACCCCGA [81] S._solfataricus --------ATT-----CCGGTTGATCCTGCC---GGACCCGACCGCTATCGGGGTAGGGTCCCCAATGCG-----CGAAAGCGTGAGGGCGCTACCCCGA [79] T._tenax --------AAA-----CCGGTTGATCCTGCC---GGACCTGACCGCTATCGGGGTGGGGTCCGCAATGCG-----GGCAACCGCGACGGGGCCACCCCGA [79] M._vannielii --------ATT-----CCGGTTGATCCCGCC---GGAGGCTACTGCTATTGGGGTTCGATCCGCAATGCA-----CGAAAGTGCGACGGGGGGACCCCAA [79] MB._formicicum --------AGT-----CCGTTTGATCCTGGC---GGAGGCCACTGCTATTGGGTTTCGATCCGCAATGCA-----CGAAAGTGCGACGGGGGAAACCCAA [79] MS._hungatei --------ATT-----CTGGTTGATCCTGCC---AGAGGCCACTGCTATCGGGGTTTGATTTACCATGCG-----GGCAACCGTGATAAGGAAACCCCGA [79] H._volacanii --------ATT-----CCGGTTGATCCTGCC---GGAGGTCATTGCTATTGGGGTCCGATTTACACTGCA-----CGCAAGTGCGATAAGGGGACCCCAA [79] HC._morrhuae --------ATT-----CCGGTTGATCCTGCC---GGAGGCTATTGCTATCGGGGTCCGATTTACACTGCA-----CGCCAGTGCGATAAGGGGACCCCGA [79] H.HALO --------ATT-----CCGGTTGATCCTGCC---GGAGGCCATTGCTATCGGAGTCCGATTTACACTGTA-----CGAAAGTGCGATAAGGGGACTCCGA [79] H._cutirubrum --------ATT-----CCGGTTGATCCTGCC---GGAGGCCATTGCTATCGGAGTCCGATTTACACTGTA-----CGAAAGTGCGATAAGGGGACTCCGA [79] AN._nidulans --CAAAATGGA-----GAGTTTGATCCTGGCTCAGGAT--GAACGCTGGCGGCGTGC--TCCGCAATGGG-----CGCAAGCCTGACGGAGCAACGCCGC [84] HE.CHL ----------------------GATCCTGGCTCAGGAC--GAACGCTGGCGGCATGC--TCCGCAATGGG-----CGAAAGCCTGACGGAGCAATGCCGC [69] Bc._subtilis --TTTATCGGA-----GAGTTTGATCCTGGCTCAGGAC--GAACGCTGGCGGCATGC--TCCGCAATGGA-----CGAAAGTCTGACGGAGCAACGCCGC [84] MY.CAP ----AAAATGA-----GAGTTTGATCCTGGCTCAGGAT--AAACGCTGGCGGCTGGC--TTCACAATGGA-----CGAAAGTCTGATGAAGCAATGCCGC [82] E._coli ---AAATTGAA-----GAGTTTGATCATGGCTCAGATT--GAACGCTGGCGGCAGGC--TGCACAATGGG-----CGCAAGCCTGATGCAGCCATGCCGC [83] MYX.XA ---CAATTGGA-----GAGTTTGATCCTGGCTCAGAAC--GAACGCTGGCGGCGTGC--TGCGCAATGGG-----CGAAAGCCTGACGCAGCAACGCCGC [83] P.TEST --CGAACTATA-----GAGTTTGATCCTGGCTCAGATT--GAACGCTGGCGGCATGC--TGGACAATGGG-----CGAAAGCCTGATCCAGCAATGCCGC [84] AG.TUM -CTCAACTTGA-----GAGTTTGATCCTGGCTCAGAAC--GAACGCTGGCGGCAGGC--TGGACAATGGG-----CGCAAGCCTGATCCAGCCATGCCGC [85] DV.DES --TGAACTGGA-----GAGTTTGATTCTGGCTCAGATT--GAACGCTGGCGGCGTGC--TGCGCAATGGG-----CGAAAGCCTGACGCAGCGACGCCGC [84] BA.FRG -TTACAACGAA-----GAGTTTGATCCTGGCTCAGGAT--GAACGCTAGCTACAGGC--TGGTCAATGGG-----CGCTAGCCTGAACCAGCCAAGTAGC [85] 'Zea_mays_(chloroplast)' --CTCAT-GGA-----GAGTTCGATCCTGGCTCAGGAT--GAACGCTGGCGGCATGC--TCCGCAATGGG-----CGAAAGCCTGACGGAGCAATGCCGC [83] T.AMIT ATCATAGTCAAAATCTGAGTTTGATCCTGGCTCAGAAG--GAACGCTAGCTATATGC--TGGACAATGGG-----CGAAAGCCCGATCCAGCAATATCGC [91] [ 110 120 130 140 150 160 170 180 190 200] [ . . . . . . . . . .] Homo_sapiens ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTCCACTTT-AA---ATCCTTTAACGAGGA-TCC [148] Rattus_norvegicus ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTCCACTTT-AA---ATCCTTTAACGAGGA-TCC [148] Xenopus_laevis ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTACACTTT-AA---ATCCTTTAACGAGGA-TCT [148] A._salina ATAACG-AT-GC-AGG-------------------ACTCATCCGAGGCC--CTGTGATTGGAATGAGTACACTTT-AA---ATCCTTTAACGAGGA-TCC [148] S._cerevisiae ATAACG-AT-AC-AGG-------------------GCCCATTCG-GGTC--TTGTAATTGGAATGAGTACAATGT-AA---ATACCTTAACGAGGA-ACA [148] P.MICA ATAACA-AT-AC-AGG-------------------GCATATCTG---TC--TTGTAATTGGAATGAGTAGAATTT-AA---ATCCCTTTACGAGTA-CCA [145] D.DISC ATATCA-AT-AC-CTA-------------------TCCTTTTTG-GAGG----GCAATTGAAATGAACACAAATT-AA---AACTCTTAATTAACA--CA [145] T.BRUC ATAGAG-CCGAC-CGT-------------------GCCCTAGTG-CATG--GTTGTTTTCAATGGGGGATACTCA-AACCCATCCAATATCGAGTA-ACA [157] E.GRAC GTAGCA-AC-CC-CGTC------------------GGCCTTACG-TGCCGATGGGGCTTGGAATGGACGCTATCC-AA---AGACAGCCGTGAGTA-TCA [155] Zea_mays ATAACA-AT-AC-CGG-------------------GCGCGTTAG-TGTC--TGGTAATTGGAATGAGTACAATCT-AA---ATCCCTTAACGAGGA-TCC [148] D._mobilis GTGCCC-CC-TT-ACG-------------------GG------G-GCTT--TTCCC-------------CGCTGT-AG---GAAGGCGGGG---GA-ATA [129] S._solfataricus GTGCCT-CC-GC-AAG-------------------GA------G-GCTT--TTCCC-------------CGCTCT-AA---AAAGGCGGGG---GA-ATA [127] T._tenax GTGCCG-GG-CG-AAG-------------------AGCC---CG-GCTT--TTGCC-------------CGGTGT-AA---GGAGCCGGGC---GA-ATA [130] M._vannielii GTGC-T-CA-TGCACA-------------------GCAT---GG-GCTT--TTATC-------------AAGTGT-AA---ACAGCTTGAG---GA-ATA [130] MB._formicicum GTGCCA-CT-CTTAAC-------------------GGGG---TG-GCTT--TTCTT-------------AAGTGT-AA---AAAGCTTTTG---GA-ATA [131] MS._hungatei GTGC----C-AGCACA-------------------GGCT---GG-CTGT--CCACC--------------AGTGT-AA---ATAACT-GGT---GA-AGA [126] H._volacanii GTGCGAGGG-CA-TAT-------------------AGTC---CTCGCTT--TTCTC-------------GACCGT-AA---GGCGGTCGAG---GA-ATA [132] HC._morrhuae GTGCGAGGG-CA-TAC-------------------AGTC---CTCGCTT--TTCGT-------------GACCGT-AA---GAAGGTCTCA---GA-ATA [132] H.HALO GTGTGAAGG-CA-TAG-------------------AGCC---TTCACTT--TTGTA-------------CACCGT-AA---GGTGGTGCAC---GA-ATA [132] H._cutirubrum GTGTGAAGG-CA-TAG-------------------AGCC---TTCACTT--TTGTA-------------CACCGT-AA---GGTGGTGCAC---GA-ATA [132] AN._nidulans GTGGGG-GA-GG-AAGGTT--TT-T-GGACTGTAAACCC---CT-TTTC--TCAGG-------------GAAGAA-GA---AAG---------------- [138] HE.CHL GTGGGG-GA-TG-AAGGTC--TT-C-GGATTGTAAACCC---TT-GTCT--TCGGG-------------GAAGAA------------GTT---------- [121] Bc._subtilis GTGAGT-GA-TG-AAGGTT--TT-C-GGATCGTAAAGCT---CT-GTTG--TTAGG-------------GAAGAA-CA---AGTACCGTTC---GA-ATA [150] MY.CAP GTGAGT-GA-TG-ACGGCC--TT-C-GGGTTGTAAAGCT---CT-GTTG--TAAGG-------------GAAGAA-AA---AATAGAGTAG---GA-A-A [147] E._coli GTGTAT-GA-AG-AAGGCC--TT-C-GGGTTGTAAAGTA---CT-TTCA--GCGGG-------------GAGGAAGGG---AGTAAAGTT-----A-ATA [148] MYX.XA GTGTGT-GA-TG-AAGGTC--TT-T-GGATTGTAAAGCA---CT-TTCG--ACCGG-------------GAAGAA-AA---CCCGTTGGCT---AACATC [150] P.TEST GTGCAG-GA-TG-AAGGCC--CT-C-GGGTTGTAAACTG---CT-TTTG--TACGG-------------AACGAA--A---AGCCTGGGGC---TA-ATA [149] AG.TUM GTGAGT-GA-TG-AAGGCC--TT-A-GGGTTGTAAAGCT---CT-TTCA--CCGGA-------------GAAGAT-AA---------------------- [136] DV.DES GTGAGG-GA-TG-AAGGTT--TT-C-GGATCGTAAACCT---CT-GTCA--GAAGG-------------GAAGAA-AC---TACGTTGTGC---TA-ATC [150] BA.FRG GTGAAG-GA-TG-AAGGCT--CTATGGGTCGTAAACTT---CT-TTTA-?-TATAA-------------GAATAA------AGTGCAGTAT---GT-ATA [151] 'Zea_mays_(chloroplast)' GTGGAG-GT-GG-AAGGCC--TA-C-GGGTCGTCAACTT---CT-TTTC--TCGGA-------------GAAGAA------------------------- [132] T.AMIT GTGAGT-GA-AG-AAGGGCAATG-C-CGCTTGTAAAGCT---CT-TTCG--TCGAG-------------TGCG--------------------------- [140] [ 210 220 230 240 250 260 270 280 290 300] [ . . . . . . . . . .] Homo_sapiens ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA [219] Rattus_norvegicus ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA [219] Xenopus_laevis ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA [219] A._salina ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAACTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCG [219] S._cerevisiae ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCA [219] P.MICA ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCG [216] D.DISC ATTG?AG-----------------------------GGCAAGTCTGGTGCCAGCRGCCGCGGTAATTCCAGCTCCAATAGCATATACTAAAGTTGTTGCA [216] T.BRUC ATTGGAG-----------------------------GACAAGTCTGGTGCCAGCACCCGCGGTAATTCCAGCTCCAAAAGCGTATATTAATGCTGTTGCT [228] E.GRAC ACCGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCTGCGGTAATTCCAGCTCCGAGGGCGTATACTAACATTGCTGCT [226] Zea_mays ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCA [219] D._mobilis AGCGGGG-----------------------------GGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCGGGACGATTATTGGG [200] S._solfataricus AGCGGGG-----------------------------GGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCTCCGCGAGTGGTCGGGGTGATTACTGGG [198] T._tenax AGCGGGG-----------------------------GGTAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCAGGGTGATTACTGGG [201] M._vannielii AGGGCTG-----------------------------GGCAAGTTCGGTGCCAGCAGCCGCGGTAATACCGACGGCCCGAGTGGTAGCCACTCTTATTGGG [201] MB._formicicum AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCAGCTCAAGTGGTGGCCGTTTTTATTGGG [202] MS._hungatei AGGGC?G-----------------------------GGCAAG?????--------------GTAATACCG-------GAGTGGTGGCCGCTATTACTGGG [176] H._volacanii AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCTCAAGTGATGACCGATATTATTGGG [203] HC._morrhuae AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCTCGAGTGATAGCCACTATTATTGGG [203] H.HALO AGGACTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGG [203] H._cutirubrum AGGACTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGG [203] AN._nidulans -----------TGACGGTACCTGAGGAATAAGCCTCGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGGAGAGGCAAGCGTTATCCGGAATTATTGGG [227] HE.CHL ----------TTGACGGTACCCGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATGACTGGG [211] Bc._subtilis GGGCGGTACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGG [250] MY.CAP TGACTTTATCTTGACAGTACCTTACCAGAAAGCCACGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGTGGCAAGCGTTATCCGGATTTATTGGG [247] E._coli CCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGG [248] MYX.XA CAACGG---CTTGACGGTACCGGGAGAAGAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATTATTGGG [247] P.TEST TCCCCGGGTCATGACGGTACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGG [249] AG.TUM -----------TGACGGTATCCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATTACTGGG [225] DV.DES AG-CAGCGTACTGACGGTACCTTCAAAGGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGG [249] BA.FRG C-----TGTTTTGTATGTATTATATGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGG [246] 'Zea_mays_(chloroplast)' -------ACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGG [225] T.AMIT ----CGATCAT-GACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGG [235] [ 310 320 330 340 350 360 370 380 390 400] [ . . . . . . . . . .] Homo_sapiens GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCC----------------------------------------------------- [266] Rattus_norvegicus GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCC----------------------------------------------------- [266] Xenopus_laevis GTTAAAAAGCTCGTAGTTGGATCTTGGGATCGAGCTGGCGGTCCGCCGCGAGGC---------------------------------------------- [273] A._salina GTTAAAAAGCTCGTAGTTGGATATGGGTCTCGGTCGGGTGGTGCCGCCTCAC------------------------------------------------ [271] S._cerevisiae GTTAAAAAGCTCGTAGTTGAACTTTGGGCCCGGTTGGCCGGTCCGATTTTTT------------------------------------------------ [271] P.MICA GTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGACGACCGGTCCGCCTCT-------------------------------------------------- [266] D.DISC GTTAAAAAGCTCGTAGTTGAAGTTTAAGGTTTACCGGGTTTATGTCATTTACCACTT------------------------------------------- [273] T.BRUC GTTAAAGGGTTCGTAGTTGAACTGTGGGCCACGTAGTTTTGTGCCGTGCCAGTC----------CCGTCCA--------CCTCGGAC-------GTGTT- [302] E.GRAC GTTAAAACACTTGTAGTCTGCCTACGGGCTGCA-GGTCTGCTGGGTGGCCGGTTTGTTGTTTCTCTGGCCAGGGAAGGACCTCGGTTCGACCCTGTGTTG [325] Zea_mays GTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGCCGGGTGCCGCCGCC---------------------------------------------------- [267] D._mobilis CCTAAAGCGCCCGTAGCCG--------GCCCGGCAAGTCCCCTC-------------------------------------------------------- [236] S._solfataricus CCTAAAGCGCCTGTAGCCG--------GCCCACCAAGTCGCCCC-------------------------------------------------------- [234] T._tenax CTTAAAGCGCCCGTAGCCG--------GCCCGGCAAGTCGCTCC-------------------------------------------------------- [237] M._vannielii CCTAAAGCGTCCGTAGCCG--------GTCCAGTAAGTCCCTGT-------------------------------------------------------- [237] MB._formicicum CCTAAAGCGTTCGTAGCCG--------GCTTGATAAGTCTCTGG-------------------------------------------------------- [238] MS._hungatei CTTAAAGGGTCCGTAGCTG--------GATATACAAGTCCCTTG-------------------------------------------------------- [212] H._volacanii CCTAAAGCGTCCGTAGCCG--------GCCACGAAGGTTCATCG-------------------------------------------------------- [239] HC._morrhuae CCTAAAGCGTCCGTAGCCG--------GCCGAACAGGTCCGTCG-------------------------------------------------------- [239] H.HALO CCTAAAGCGTCCGTAGCTG--------GCTGAACAAGTCCGTTG-------------------------------------------------------- [239] H._cutirubrum CCTAAAGCGTCCGTAGCTG--------GCTGAACAAGTCCGTTG-------------------------------------------------------- [239] AN._nidulans CGTAAAGCGCCTGCAGGCG--------GTTAATCAAGTCTGTTG-------------------------------------------------------- [263] HE.CHL CGTAAAGCGCGTGCAGGCG--------GACATGTAAGTCTGAGG-------------------------------------------------------- [247] Bc._subtilis CGTAAAGCGCTCGCAGGCG--------GTTTCTTAAGTCTGATG-------------------------------------------------------- [286] MY.CAP CGTATAGGGTGCGTAGGCG--------GTTTTGCAAGTTTGAGG-------------------------------------------------------- [283] E._coli CGTAAAGCGCACGCAGGCG--------GTTTGTTAAGTCAGATG-------------------------------------------------------- [284] MYX.XA CGTAAAGCGCGTGTAGGCG--------GCGTGACAAGTCGGGTG-------------------------------------------------------- [283] P.TEST CGTAAAGCGTGCGCAGGCG--------GTTTTGTAAGACAGTGG-------------------------------------------------------- [285] AG.TUM CGTAAAGCGCACGTAGGCG--------GATATTTAAGTCAGGGG-------------------------------------------------------- [261] DV.DES CGTAAAGCGCACGTAGGCT--------GTAGTGTAAGTCAGGGG-------------------------------------------------------- [285] BA.FRG TTTAAAGGGAGCGTAGGTG--------GACTGGTAAGTCAGTTG-------------------------------------------------------- [282] 'Zea_mays_(chloroplast)' CGTAAAGCGTCTGTAGGTG--------GCTTTTCAAGTCCGCCG-------------------------------------------------------- [261] T.AMIT CGTAAAGGGCACGTAGGCG--------GTGAATCGGGTTGAAAG-------------------------------------------------------- [271] [ 410 420 430 440 450 460 470 480 490 500] [ . . . . . . . . . .] Homo_sapiens ---------GCGAGGCGAGCCACCGCCC-GTCCCC---GCCCCTTGCCTCTCGG-CG-CCCC-------------------------------------- [313] Rattus_norvegicus ---------GCGAGGCGGCTCAGCGCCCTGTCCCC---AGCCCCTGCCTCTCGG-CG-CCCC-------------------------------------- [314] Xenopus_laevis --------GGCTAC-CGCCTGTCCCAGCCCCTGCCTCTCGGCGCCTCCCCGATG-CT-CTTG-------------------------------------- [324] A._salina --------GGTGGTCACTGCCTCGATCGGACAATTCATTGGATCGTTCGGGGTG-CT-CTTA-------------------------------------- [323] S._cerevisiae --------CGTGTACTGGATTTCCAACGGGGCCTT---TCCTTCTGGCTAACCT-TG-AGTC-------------------------------------- [320] P.MICA ---------GGGTGAGTATCTGCTCGCCTGGCATC---TTCTT--GGAGAACGT-AG-CTGG-------------------------------------- [312] D.DISC --------CGTGGT-TAAATCGACACCGGTATCTCT-TTCTTAATAGTTCAGCT-TG-TATT-------------------------------------- [323] T.BRUC ------------TTGACCCACGCCCTCGTGGCCCG---TGAACACACTCAGATA-CA-AG--AAACACGGGAGCGGTTCCT------------CCTCACT [371] E.GRAC GGCTGCAACGGCTGGACTCAACCCCCAGTGGTACG---TCCCTGCGCCCACCTC-TC-AGTCGATGGTGAGATCTGCTCCTGCCAAAAGTCTGCTTCACT [420] Zea_mays ---------GTACG-GGCAGAACCGACCGGCTCGA---CCCTTCTGCCGGCGAT-GC-GCTC-------------------------------------- [314] D._mobilis ---------------CTAAATTCCCG-------------------GGCTCAACC-CG-GG---------------------------------------- [260] S._solfataricus ---------------TTAAAGTCCCC-------------------GGCTCAACC-GG-GG---------------------------------------- [258] T._tenax ---------------TGAAATCCCCA-------------------GGCTCAACC-TG-GG---------------------------------------- [261] M._vannielii ---------------TTAAATTCTCT-------------------GGCTTAACCA-G-AG---------------------------------------- [261] MB._formicicum ---------------TGAAATCTCAC-------------------GGCTTAACCGTG-AG---------------------------------------- [263] MS._hungatei ---------------AGAAATCCGCC-------------------GGCTTAACCG-G-TG---------------------------------------- [236] H._volacanii ---------------GGAAATCCGCC-------------------AGCTCAACT-GG-CG---------------------------------------- [263] HC._morrhuae ---------------GGAAATCCACC-------------------CGCTCAACG-GGTGG---------------------------------------- [264] H.HALO ---------------GGAAATCTGTC-------------------CGCTTAACG-GG-CA---------------------------------------- [263] H._cutirubrum ---------------GGAAATCTGTC-------------------CGCTTAACG-GG-CA---------------------------------------- [263] AN._nidulans ---------------TCAAAGCGTGG-------------------GGCTCAACC-TC-AT---------------------------------------- [287] HE.CHL ---------------TGAAAGCTTGG-------------------AGCTCAACT-CC-GA---------------------------------------- [271] Bc._subtilis ---------------TGAAAGCCCCC-------------------GGCTCAACC-GG-GG---------------------------------------- [310] MY.CAP ---------------TTAAAGTCCGG-------------------AGCTCAACT-CC-GG---------------------------------------- [307] E._coli ---------------TGAAATCCCCG-------------------GGCTCAACC-TG-GG---------------------------------------- [308] MYX.XA ---------------TGAAAGCCCTC-------------------AGCTCAACT-GA-GG---------------------------------------- [307] P.TEST ---------------TGAAATCCCCG-------------------GGCTCAACC-TG-GG---------------------------------------- [309] AG.TUM ---------------TGAAATCCCAG-------------------AGCTCAACT-CT-GG---------------------------------------- [285] DV.DES ---------------TGAAATCCCAC-------------------GGCTCAACC-GT-GG---------------------------------------- [309] BA.FRG ---------------TGAAAGTTTGC-------------------GGCTCAACC-GT-AA---------------------------------------- [306] 'Zea_mays_(chloroplast)' ---------------TCAAATCCCAG-------------------GGCTCAACC-CT-GG---------------------------------------- [285] T.AMIT ---------------TGAAAGTCGCC-------------------AAA--AAGT-GG-CG---------------------------------------- [293] [ 510 520 530 540 550 560 570 580 590 600] [ . . . . . . . . . .] Homo_sapiens --------------CTCGATGCTCT-TAG-----------------------------------CT-GAGTGTCCCGCGGGGCCCGAAGCGTTTACTT-- [360] Rattus_norvegicus --------------CTCGATGCTCT-TAG-----------------------------------CT-GAGTGTCCCGCGGGGCCCGAAGCGTTTACTT-- [361] Xenopus_laevis --------------ACTGAGTGTCC-CGG-----------------------------------GG-GC--------------CCGAAGCGTTTACTT-- [357] A._salina --------------ACCGAGTGTCC-TGG-----------------------------------GT-GG--------------CCGATACGTTTACTT-- [356] S._cerevisiae --------------CTTGTGGCTCT-TGG-----------------------------------CG-AA--------------CCAGGACTTTTACTT-- [353] P.MICA --------------CACTTGACTGTGTGG-------------------------------TGCGGT-AT--------------CCAGGACTTTTACTT-- [350] D.DISC --------------ATCTTTGATAG-TGC-----------------------------------TT-GT--------------TTGGACATTTCACTG-- [356] T.BRUC --------------TTCACGCATGT-CATGCATGCGAGGGG------------------------G-CG--------------TCCGTGAATTTTACTGT [417] E.GRAC GCAGGCCAAAGCGGTTTATGCCTCC-CGCACTGGCAACGGACACCAACAGGGGACCCAGC--CTCG-AG--------------CTGGGTAGTCTACCTCT [502] Zea_mays --------------CTGGCCTTAAC-TGG-----------------------------------CC-GGGT------CGTGCCTCCGGGCCGTTACTT-- [355] D._mobilis -------------------GACTGG-AGG-----------------------------------GG-A-------------------------------- [272] S._solfataricus -------------------AACTGG-GGG-----------------------------------CG-A-------------------------------- [270] T._tenax -------------------GGCAGG-GGG-----------------------------------CG-A-------------------------------- [273] M._vannielii -------------------GACTGG-CAG-----------------------------------GG-A-------------------------------- [273] MB._formicicum -------------------AATTGC-TGG-----------------------------------AG-A-------------------------------- [275] MS._hungatei -------------------GCGTTC-AGG-----------------------------------GG-A-------------------------------- [248] H._volacanii -------------------GGCGTC-CGG-----------------------------------TGAA-------------------------------- [276] HC._morrhuae -------------------GACGTC-CGG-----------------------------------CGGA-------------------------------- [277] H.HALO -------------------GGCGTC-CAG-----------------------------------CGGA-------------------------------- [276] H._cutirubrum -------------------GGCGTC-CAG-----------------------------------CGGA-------------------------------- [276] AN._nidulans -------------------ACAGGC-AAT-----------------------------------GG-A-------------------------------- [299] HE.CHL -------------------AACGGC-CTT-----------------------------------GG-A-------------------------------- [283] Bc._subtilis -------------------AGGGTC-ATT-----------------------------------GG-A-------------------------------- [322] MY.CAP -------------------TTCGCC--TT-----------------------------------GA-A-------------------------------- [318] E._coli -------------------AACTGC-ATC-----------------------------------TG-A-------------------------------- [320] MYX.XA -------------------AAGTGC-GCC-----------------------------------CG-A-------------------------------- [319] P.TEST -------------------AACTGC-CAT-----------------------------------TG-T-------------------------------- [321] AG.TUM -------------------AACTGC-CTT-----------------------------------TG-A-------------------------------- [297] DV.DES -------------------AACTGC-CTT-----------------------------------TG-A-------------------------------- [321] BA.FRG -------------------AATTGC-AGC-----------------------------------TG-A-------------------------------- [318] 'Zea_mays_(chloroplast)' -------------------ACAGGC-GGT-----------------------------------GG-A-------------------------------- [297] T.AMIT -------------------GAATGC-TCT-----------------------------------CG-A-------------------------------- [305] [ 610 620 630 640 650 660 670 680 690 700] [ . . . . . . . . . .] Homo_sapiens ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGCCCGAGCCGCCT-------GGATACCG-C [408] Rattus_norvegicus ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGCCCGAGCCGCCT-------GGATACCG-C [409] Xenopus_laevis ----------------------------------TGAAAAAATTAGAGTGTTCCAAGCA----------GGC-CGCGTCGCCT-------GGATACTT-C [404] A._salina ----------------------------------TGAACAAATTAGAGTGCTTAAAGCA----------GGTGCACCGCGCCT-------GAATATCA-C [404] S._cerevisiae ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGC--GTATTGCTC-------GAATATAT-T [399] P.MICA ----------------------------------TGAGGAAATTAGAGTGTTTCAAGCC----------AGT---TACGCCTT-------GAATACAT-T [395] D.DISC ----------------------------------TGAGAAAATTGTGGTGTTTAAAGCA----------GGC--GTCTCGCCT-------GATCTTTTGC [403] T.BRUC GACC--------------------------------AAAAA----AGTGCGACCAAAGCAGTCTGCCGAC-T--TGAATTACAAAGCATGGGATAACG-A [477] E.GRAC GGTCCACCACCGGAGCCCACCGTCTTCGACACCCTGGAAAACTCAGTGTGCTCAAAGCATCCCCGCGACGGC--TGAATGTCCATCCATGGAATGTCA-A [599] Zea_mays ----------------------------------TGAAGAAATTAGAGTGCTCAAAGCA----------AGC---CATCGCTCT------GGATACAT-T [401] D._mobilis ---------------------------------------------------------------------------TACTGCCG-------GGCTA----- [285] S._solfataricus ---------------------------------------------------------------------------TACTGGTG-------GGCTA----- [283] T._tenax ---------------------------------------------------------------------------TACTGCCG-------GGCTA----- [286] M._vannielii ---------------------------------------------------------------------------TACTGCTG-------GACTT----- [286] MB._formicicum ---------------------------------------------------------------------------TACTATTA-------GCCTT----- [288] MS._hungatei ---------------------------------------------------------------------------AACTGTAT-------TTCTA----- [261] H._volacanii ---------------------------------------------------------------------------AACCACGT-------GGCTT----- [289] HC._morrhuae ---------------------------------------------------------------------------AACCAGTC-------GGCTT----- [290] H.HALO ---------------------------------------------------------------------------AACTGTTC-------AGCTT----- [289] H._cutirubrum ---------------------------------------------------------------------------AACTGTTC-------AGCTT----- [289] AN._nidulans ---------------------------------------------------------------------------AACTGATT-------GACTA----- [312] HE.CHL ---------------------------------------------------------------------------AACTGGAT-------GTCTT----- [296] Bc._subtilis ---------------------------------------------------------------------------AACTGGGG-------AACTT----- [335] MY.CAP ---------------------------------------------------------------------------GACTGTTT-------TACTA----- [331] E._coli ---------------------------------------------------------------------------TACTGGCA-------AGCTT----- [333] MYX.XA ---------------------------------------------------------------------------AACTGTTG-------TGCTT----- [332] P.TEST ---------------------------------------------------------------------------GACTGCAA-------GGCTA----- [334] AG.TUM ---------------------------------------------------------------------------TACTGGGT-------ATCTT----- [310] DV.DES ---------------------------------------------------------------------------TACTGCAC-------AACTT----- [334] BA.FRG ---------------------------------------------------------------------------TACTGTCA-------GTCTT----- [331] 'Zea_mays_(chloroplast)' ---------------------------------------------------------------------------AACTACCA-------AGCTG----- [310] T.AMIT ---------------------------------------------------------------------------AACCAATT-------CACTT----- [318] [ 710 720 730 740 750 760 770 780 790 800] [ . . . . . . . . . .] Homo_sapiens AGCTAGGAATAA---TGGAATAGGA-------------C-CGCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G--------- [462] Rattus_norvegicus AGCTAGGAATAA---TGGAATAGGA-------------C-CGCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G--------- [463] Xenopus_laevis AGCTAGGAATAA---TGGAATAGGA-------------C-TCCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G--------- [458] A._salina AGCATGGAATGA---TGGAATAGGA-------------C-CTCGGTCTTATTATG-------------TTGGTTTTC------TGGACTTG--------- [459] S._cerevisiae AGCATGGAATAA---TAGAATAGGA-------------CGTTTGGTTCTATTTTG-------------TTGGTTTCT------AGGACC-A--------- [454] P.MICA AGCATGGAATAA---TAAGATAGGA-------------C-CTCGGTTCTATTTTG-------------TTGGTTTCT------AGAGCT-G--------- [449] D.DISC AGCATGGTATGA---TGAAACATGA-------------CATTTTACGCTATTGGT-------------TTGCGTTTA------AAG-------------- [454] T.BRUC AGCATCAGCCCTGGG-GCCACCGTTTCGGCTTTTGTTGGTTTTAGAAGTCCTTGGGAGATTATGGGGCCGCGTGCCTTGGGTCGGTGTT-TCGTGTCTCA [575] E.GRAC GGCATCGACCAAGTGTGGCA----TTGGAGTTGTGCTGCCTTGGGGCCCACTCTGGACAACCTGGTGGTGTGTTCCTG----CAGGATC-AACAGGATCG [690] Zea_mays AGCATGGGATAA---CATCATAGGA-------------T-TCCGGTCCTATTGTG-------------TTGGCCTTC------GGGATC-G--------- [455] D._mobilis ---------------------------------------------------------------------------------------------------- [285] S._solfataricus ---------------------------------------------------------------------------------------------------- [283] T._tenax ---------------------------------------------------------------------------------------------------- [286] M._vannielii ---------------------------------------------------------------------------------------------------- [286] MB._formicicum ---------------------------------------------------------------------------------------------------- [288] MS._hungatei ---------------------------------------------------------------------------------------------------- [261] H._volacanii ---------------------------------------------------------------------------------------------------- [289] HC._morrhuae ---------------------------------------------------------------------------------------------------- [290] H.HALO ---------------------------------------------------------------------------------------------------- [289] H._cutirubrum ---------------------------------------------------------------------------------------------------- [289] AN._nidulans ---------------------------------------------------------------------------------------------------- [312] HE.CHL ---------------------------------------------------------------------------------------------------- [296] Bc._subtilis ---------------------------------------------------------------------------------------------------- [335] MY.CAP ---------------------------------------------------------------------------------------------------- [331] E._coli ---------------------------------------------------------------------------------------------------- [333] MYX.XA ---------------------------------------------------------------------------------------------------- [332] P.TEST ---------------------------------------------------------------------------------------------------- [334] AG.TUM ---------------------------------------------------------------------------------------------------- [310] DV.DES ---------------------------------------------------------------------------------------------------- [334] BA.FRG ---------------------------------------------------------------------------------------------------- [331] 'Zea_mays_(chloroplast)' ---------------------------------------------------------------------------------------------------- [310] T.AMIT ---------------------------------------------------------------------------------------------------- [318] [ 810 820 830 840 850 860 870 880 890 900] [ . . . . . . . . . .] Homo_sapiens -------------------------AGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG [497] Rattus_norvegicus -------------------------AGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG [498] Xenopus_laevis -------------------------GGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG [493] A._salina -------------------------AGGTAATGGTT----------------------------------------AACAGAGACAGACGGGGGCATTCG [494] S._cerevisiae -------------------------TCGTAATGATT----------------------------------------AATAGGGACGGTCGGGGGCATCGG [489] P.MICA -------------------------AGGTAATGATT----------------------------------------AATAGGGATAGTTGGGGGCATTCG [484] D.DISC --------------------------TGTAATGATT----------------------------------------AATAGGGATGGATGGGGGTGTTCA [488] T.BRUC TTTTTGTGGCGCGCACATTCGGCTCTTCGTGATGTTTTTTTACATTCATTGCGACGCGCGGCTTCCAGGAAT--GAAGGAGGGTAGTTCGGGGGAGAACG [673] E.GRAC TTGCCCTGCCTGGCC--TTCGGGTCTCGTCAGGCTTCGTCCCCTGTCCCTGCAGCTTGCACCCATCGATCGTAAGTGATGGGACTGTTCGGGGTGAAAGA [788] Zea_mays -------------------------GAGTAATGATT----------------------------------------AATAGGGACAGTCGGGGGCATTCG [490] D._mobilis -------------------------------------------------------------------------------GGGGGTGGGAGAGGCCGAGGG [306] S._solfataricus -------------------------------------------------------------------------------GGGGGCGGGAGAGGCGGGGGG [304] T._tenax -------------------------------------------------------------------------------GGGGGCGGGAGAGGCCGCCGG [307] M._vannielii -------------------------------------------------------------------------------GGGACCGGGAGAGGACAAGGG [307] MB._formicicum -------------------------------------------------------------------------------GAGGCCGGGAGAGGTTAGCGG [309] MS._hungatei -------------------------------------------------------------------------------GGGACCGGGAGAGGTGAGAGG [282] H._volacanii -------------------------------------------------------------------------------GGGACCGGAAGGCTCGAGGGG [310] HC._morrhuae -------------------------------------------------------------------------------GGGGCCGGGAGACCAGAGAGG [311] H.HALO -------------------------------------------------------------------------------GGGACCGGAAGACCTGAGGGG [310] H._cutirubrum -------------------------------------------------------------------------------GGGACCGGAAGACCTGAGGGG [310] AN._nidulans -------------------------------------------------------------------------------GAGTATGGTAGGGGTAGCGGG [333] HE.CHL -------------------------------------------------------------------------------GAGAGATGGAGAGGATAGCGG [317] Bc._subtilis -------------------------------------------------------------------------------GAGTGCAGAAGAGGAGAGTGG [356] MY.CAP -------------------------------------------------------------------------------GAATGCAAGAGAGGTAAGCGG [352] E._coli -------------------------------------------------------------------------------GAGTCTCGTAGAGGGGGGTAG [354] MYX.XA -------------------------------------------------------------------------------GAGTGCCGGA?AGGGTGGCGG [353] P.TEST -------------------------------------------------------------------------------GAGTGCGGCAGAGGGGGATGG [355] AG.TUM -------------------------------------------------------------------------------GAGTATGGAAGAGGTAAGTGG [331] DV.DES -------------------------------------------------------------------------------GAATCCGGGAGAGGGTGGCGG [355] BA.FRG -------------------------------------------------------------------------------GAGTACAGTAGAGGTGGGCGG [352] 'Zea_mays_(chloroplast)' -------------------------------------------------------------------------------GAGTACGGTAGGGGCAGAGGG [331] T.AMIT -------------------------------------------------------------------------------GAGTGAGACAGAGGAGAGTGG [339] [ 910 920 930 940 950 960 970 980 990 1000] [ . . . . . . . . . .] Homo_sapiens TATTGCGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG [595] Rattus_norvegicus TATTGCGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG [596] Xenopus_laevis TATTGTGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG [591] A._salina TACTGCGACGCTA--GAGGTGAAATTCTTGGACCGTCGCAAGACGAACAACTGCGAACAAGTTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTA [592] S._cerevisiae TATT-CAATTGTC--GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTTGCCAAGGACGTTTTCGTTAATCAAGAACGAAAGTTG [586] P.MICA TATT-TAACTGGTCAGAGGTGAAATTCTCGGATTTGTTAAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCAAGAACGAAAGTTA [583] D.DISC TATTGGTGGGCGA--GAGGTGAAATTCGTTGACCCTATCAAGATGAACTTCTGCGAAAGCATTCACCAAATACTTCCCCATTAATCAAGAACGAAAGTTT [586] T.BRUC TACT-GGTGCGTCA-GAGGTGAAATTCTTAGACCGCACCAAGACGAACTACAGCGAAGGCATTCTTCAAGGATACCTTCCTCAATCAAGAACCAAAGTGT [771] E.GRAC TACG-GGAGCGCCA-GAGGTGAAATTCTTAGATCGCTGCCAGATCCACTGCAGCGAAGGCGTTCTGCAAGTGCACGTCCGTCGATCAAGAATGAGAGTTC [886] Zea_mays TATTTCATAGTCA--GAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTG [588] D._mobilis TACTCCCGGGGTA--GGGGCGAAATCCTATAATCCCGGGAGGACCACCAGTGGCGAAGGCGCTCGGCTGGAACACGCCCGACGGTGAGGGGCGAAAGCCG [404] S._solfataricus TACTCCCGGAGTA--GGGGCGAAATCCTTAGATACCGGGAGGACCACCAGTGGCGGAAGCGCCCCGCTAGAACGCGCCCGACGGTGAGAGGCGAAAGCCG [402] T._tenax TACTCCGGGGGTA--GGGGCGAAATCCTATAATCCCCGGAGGACCACCAGTGGCGAAAGCGGGCGGCCAGAACGCGCCCGACGGTGAGGGGCGAAAGCCG [405] M._vannielii TACTCCAGGGGTA--GCGGTGAAATGTGTTGATCCTTGGAGGACCACCTATGGCGAAGGCACTTGTCTGGAACGGGTCCGACGGTGAGGGACGAAAGCCA [405] MB._formicicum TACTCCCGGGGTA--GGGGTGAAATCCTATAATCCCGGGAGGACCACCTGTGGCGAAGGCGGCTAACTGGAACGGGCCTGACGGTGAGTAACGAAAGCCA [407] MS._hungatei TACTGCCGGGGTA--GGAGTGAAATCCTGTAATCCCGGTGGGACCACCTATGGCGAAGGCATCTCACCAGAACGGGTCCGACAGTGAGGGACGAAAGCTG [380] H._volacanii TACGTCCGGGGTA--GGAGTGAAATCCCGTAATCCTGGACGGACCACCGATGGCGAAAGCACCTCGAGAAGACGGATCCGACGGTGAGGGACGAAAGCTA [408] HC._morrhuae TACGTCCGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCACCGGTAGCGAAAGCGTCTCTGGAGAACGGACCCGACGGTGAGGGACGAAAGCTT [409] H.HALO TACGTCTGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGGAGAACGGATCCGACAGTGAGGGACGAAAGCTA [408] H._cutirubrum TACGTCTGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGGAGAACGGATCCGACAGTGAGGGACGAAAGCTA [408] AN._nidulans AATTCCAGGTGTA--GCGGTGAAATGCGTAGATATCTGGAAGAACACCAGCGGCGAAAGCGCGCTACTGGGCCATAACTGACGCTCATGGACGAAAGCTA [431] HE.CHL AATTCCCGGTGTA--GCGGTGAAATGCGTAGATATCGGGAGGAACACCCGTGGCGAAGGCGGCTATCTGGACATTATCTGACGCTGAGGCGCGAAAGCGT [415] Bc._subtilis AATTCCACGTGTA--GCGGTGAAATGCGTAGAGATGTGGAGGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGTAACTGACGCTGAGGAGCGAAAGCGT [454] MY.CAP AATTCCATGTGTA--GCGGTGAAATGCGTAGATATATGGAAGAACACCTGTGGCGAAAGCGGCTTACTGGCTTGTTATTGACGCTGAGGCACGAAAGCGT [450] E._coli AATTCCAGGTGTA--GCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGT [452] MYX.XA AATTCCCCAAGTA--GAGGTGAAATTCGTAGATATGGGGAGGAACACCGGTGGCGAAGGCGGCCACCTGGACGGTAACTGACGCTGAGACGCGAAAGCGT [451] P.TEST AATTCCGCGTGTA--GCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGGCGAAGGCAATCCCCTGGGCCTGCACTGACGCTCATGCACGAAAGCGT [453] AG.TUM AATTCCGAGTGTA--GAGGTGAAATTCGTAGATATTCGGAGGAACGCCAGTGGCGAAGGCGGCTTACTGGTCCATTACTGACGCTGAGGTGCGAAAGCGT [429] DV.DES AATTCCAGGTGTA--GGAGTGAAATCCGTAGATATCTGGAGGAACATCAGTGGCGAAGGCGGCCACCTGGACCGGTATTGACGCTGAGGTGCGAAAGCGT [453] BA.FRG AATTCGTGGTGTA--GCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGT [450] 'Zea_mays_(chloroplast)' AATTTCCGGTGGA--GCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTA [429] T.AMIT AATTTCGTGTGTA--GGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCAT [437] [ 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100] [ . . . . . . . . . .] Homo_sapiens GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACCGGCG-------------ATGCGGCG------------------ [662] Rattus_norvegicus GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACTGGCG-------------ATGCGGCG------------------ [663] Xenopus_laevis GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACTAGCG-------------ATCCGGCG------------------ [658] A._salina GAGGTTCGAAGGCGATCAGATACCGCCCTAGTTCTA--ACCATAAACGATGCCAACCAGCG-------------ATCCGCGG------------------ [659] S._cerevisiae AGGGATCGAAGACGATCTGATACCGTCGTAGTCTTA--ACCATAAACTATGCCGACTAG---------------ATCGGGTG------------------ [651] P.MICA GGGGATCGAAGACGATCAGATACCGTCCTAGTCTTA--ACCATAAACCATGCCGACTAG-------------AGATTGGAGG------------------ [650] D.DISC GGGGATCGAAGACGATCAGATACCGTCGTAGTCCAA--ACTATAAACTATGTCGACCAGGG-------------ATCGGTTA------------------ [653] T.BRUC GGGGATCAAAGATGATTAGAGACCATTGTAGTCCAC--ACTGCAAACCATGACACCCATGAATTGGGGAACATCATTGGGTGCCCGTGTGGCGGCCTTTT [869] E.GRAC GGGGAGCAAAGATGATCAGACACCGTCGTAGTCCGGCCACTGTAAACGATGCCGGCCAGGCCTTGGCAGA-GCAA--GAATC------------------ [965] Zea_mays GGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCA--ACCATAAACGATGCCGACCAGGG-------------AT-CAGCG------------------ [654] D._mobilis GGGGAGCGAACCGGATTAGATACCCGGGTAGTCCCG--GCTGTAAACGATGCGGGCTAGGT-------------GTTGGGTG------------------ [471] S._solfataricus GGGCAGCAAACGGGATTAGATACCCCGGTAGTCCCG--GCTGTAAACGATGCGGGCTAGGT-------------GTCGAGTA------------------ [469] T._tenax GGGGAGCAAAGGGGATTAGATACCCCTGTAGTCCCG--GCCGTAAACGATGCGGGCTAGCT-------------GTCGGCCG------------------ [472] M._vannielii GGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTG--GCCGTAAACTCTGCGAACTAGGT-------------GTCACCTG------------------ [472] MB._formicicum GGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTG--GCCGTAAACGATGTGGACTTGGT-------------GTTGGGAT------------------ [474] MS._hungatei GGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCA--GCTGTAAACGATGCGCGTTAGGT-------------GTGTCAGT------------------ [447] H._volacanii GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGCTCGCTAGGT-------------GTGACACA------------------ [475] HC._morrhuae GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCAA--GCTGTAAACGATGCTCGCTAGGT-------------GTGGCGTT------------------ [476] H.HALO GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGTCCGCTAGGT-------------GTGGCGCA------------------ [475] H._cutirubrum GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGTCCGCTAGGT-------------GTGGCGCA------------------ [475] AN._nidulans GGGGAGCGAAAGGGATTAGATACCCCTGTAGTCCTA--GCCGTAAACGATGAACACTAGGT-------------GTTGCG-T------------------ [497] HE.CHL GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGTGCTAGGT-------------GTTGGG-G------------------ [481] Bc._subtilis GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGTGCTAAGT-------------GTTAGG-G------------------ [520] MY.CAP GGGGAGCAAATAGGATTAGATACCCTAGTAGTCCAC--GCCGTAAACGATGAGTACTAAGT-------------GTTGGG-G------------------ [516] E._coli GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGTCGACTTGGA-------------GGTTGT-G------------------ [518] MYX.XA GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGAACTAGGT-------------GTCGTG-G------------------ [517] P.TEST GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCCTAAACGATGTCAACTGGTT-------------GTTGGG-T------------------ [519] AG.TUM GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAATGTTAGCC-------------GTCGGG-C------------------ [495] DV.DES GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCTGTAAACGATGGATGCTAGAT-------------GTCGGG-G------------------ [519] BA.FRG GGGTATCAAACAGGATTAGATACCCTGGTAGTCCAC--ACAGTAAACGATGAATACTCGCT-------------GTTTGC-G------------------ [516] 'Zea_mays_(chloroplast)' GGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTA--GCCGTAAACGATGGATACTAGGT-------------GCTGTG-C------------------ [495] T.AMIT GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCAT--GCCGTAAACGATG---------A-------------GTGTTC-G------------------ [494] [ 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200] [ . . . . . . . . . .] Homo_sapiens -----------------------------------------------------------------------------------------------GCGTT [667] Rattus_norvegicus -----------------------------------------------------------------------------------------------GCGTT [668] Xenopus_laevis -----------------------------------------------------------------------------------------------GCGTT [663] A._salina -----------------------------------------------------------------------------------------------ACGTT [664] S._cerevisiae -----------------------------------------------------------------------------------------------GTGTT [656] P.MICA -----------------------------------------------------------------------------------------------TCGTT [655] D.DISC -----------------------------------------------------------------------------------------------AAATT [658] T.BRUC GTGCCGACCCTCGGCCCCAATTTATTTATCAATTTACGTGCCTATTCTATCACCCCCGGTTCCCTCTTTTGAGGTTCTTCCGGGGTTTTTTACGGGAATA [969] E.GRAC -----------------------------------------------------------------------------------------------CTAGA [970] Zea_mays -----------------------------------------------------------------------------------------------GTGTT [659] D._mobilis -----------------------------------------------------------------------------------------------GGCTT [476] S._solfataricus -----------------------------------------------------------------------------------------------GGCTT [474] T._tenax -----------------------------------------------------------------------------------------------GGCTT [477] M._vannielii -----------------------------------------------------------------------------------------------GGCCT [477] MB._formicicum -----------------------------------------------------------------------------------------------GGCTC [479] MS._hungatei -----------------------------------------------------------------------------------------------GACCA [452] H._volacanii -----------------------------------------------------------------------------------------------GGCTA [480] HC._morrhuae -----------------------------------------------------------------------------------------------GGCTA [481] H.HALO -----------------------------------------------------------------------------------------------GGCTA [480] H._cutirubrum -----------------------------------------------------------------------------------------------GGCTA [480] AN._nidulans -----------------------------------------------------------------------------------------------GAATC [502] HE.CHL -----------------------------------------------------------------------------------------------GTATC [486] Bc._subtilis -----------------------------------------------------------------------------------------------GGTTT [525] MY.CAP -----------------------------------------------------------------------------------------------TAACT [521] E._coli -----------------------------------------------------------------------------------------------CCCTT [523] MYX.XA -----------------------------------------------------------------------------------------------GAGTT [522] P.TEST -----------------------------------------------------------------------------------------------CTTAA [524] AG.TUM -----------------------------------------------------------------------------------------------AGTAT [500] DV.DES -----------------------------------------------------------------------------------------------AGTAT [524] BA.FRG -----------------------------------------------------------------------------------------------ATATA [521] 'Zea_mays_(chloroplast)' -----------------------------------------------------------------------------------------------GACTC [500] T.AMIT -----------------------------------------------------------------------------------------------CCCTT [499] [ 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300] [ . . . . . . . . . .] Homo_sapiens ATTCCCATG--ACCC-GCCGGGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [756] Rattus_norvegicus ATTCCCATG--ACCC-GCCGGGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [757] Xenopus_laevis ATTCCCATG--ACCC-GCCGAGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [752] A._salina ACTTGAATG--ACTC-CGCGGGCAGCTT----CCGGGAAA--CCA--AAGTGTTTGGGTTCCGGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT [753] S._cerevisiae TTTTTAATG--ACCC-ACTCGGTACCTT----ACGAGAAA--TCA--AAGTCTTTGGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAAT [745] P.MICA ATCTATACG--ACTC-CTTCAGCACCTT----ATGAGAAA--TCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAAT [744] D.DISC TTTTCAA-A--ATTT-AATCGGCACCTT----GTGAGAAA--TCAT-GAGTGTTTAGATTCCGGGGGGAGTATGGTCGCAAGTCTGAAACTTAAAGGAAT [747] T.BRUC TCCTCAGCA--CGTT-TCTTACTTCTTC----ACGCGAAAGCTTG--GAGGTTACAGTCTCAGGGGGGAGTACGTTCGCAAGAGTGAAACTTAAAGAAAT [1060] E.GRAC CTCTGTCAG--GGCC-ACTCCTCCCACA----ACGAGAAA-TCCA--CAGCCTGTGGGTTCAGGGGGGAGTACTGTCGCAAGGCTGAAACTTAAAGGAAT [1060] Zea_mays ACTAATAGG--ACCCCGCTGGCCACCTT----ATGAGAAA--TCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAGGGCTAAAACTTAAAGGAAT [749] D._mobilis ------AGA--GCCC-ACCCAGTGCCGC----A-GGGAAG--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAAT [556] S._solfataricus ------AGA--GCCT-ACTCGGTGCCGC----A-GGGAAG--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTTAAAGGAAT [554] T._tenax ------AGG--GCCC-GGCCGGTGGCGT----A-GGGAAA--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGCCGCAAGGCTGAAACTTAAAGGAAT [557] M._vannielii ------CGA--GCCC-AGGTGGTGCCGA----A-GGGAAG--CCGTTAAGTTCGCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTTAAAGGAAT [557] MB._formicicum ------CGA--GCTG-CCCCAGTGCCGA----A-GGGAAG--CTGTTAAGTCCACCGCCT----GGGAAGTACGGTCGCAAGACTGAAACTTAAAGGAAT [559] MS._hungatei ------CGT--GTCA-CTGAGGTGCCGA----A-GGGAAA--CCGTGAAACGCGCCGCCT----GGGGAGTACGGTCGCAAGGCTGAAACTTAAAGGAAT [532] H._volacanii ------CGA--GCCT-GTGTTGTGCCGT----A-GGGAAG--CCGAGAAGCGAGCCGCCT----GGGAAGTACGTCCGCAAGGATGAAACTTAAAGGAAT [560] HC._morrhuae ------CGA--GCCA-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGAGCCGCCT----GGGAAGTACGTCCGCAAGGATGAAACTTAAAGGAAT [561] H.HALO ------CGA--GCCT-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGGACCGCCT----GGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAAT [560] H._cutirubrum ------CGA--GCCT-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGGACCGCCT----GGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAAT [560] AN._nidulans ------GAC--CCGC---GCAGTGCCGT----A-GCCAAC--GCGTTAAGTGTTCCGCCT----GGGGAGTACGCACGCAAGTTGGAAACTCAAAGGAAT [580] HE.CHL ------GAC--CCCC---CCGGTGCCGC----A-GTTCAC--GCAATAAGCACTCCGCCT----GGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAAT [564] Bc._subtilis ------CCG--CCCC---TTAGTGCTGC----A-GCTAAC--GCATTAAGCACTCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTCAAAGGAAT [603] MY.CAP ------C-------------AGCGCTGC----A-GCTAAC--GCATTAAGTACTCCGCCT----GAGTAGTATGCTCGCAAGAGTGAAACTCAAAGGAAT [591] E._coli ------GAG--GCG----TGGCTTCCGG----A-GCTAAC--GCGTTAAGTCGACCGCCT----GGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAAT [600] MYX.XA ------GAC--CCCC---GCGGTGCCGA----A-GCTAAC--GCATTAAGTTCTCCGCCT----GGGAAGTACGGTCGCAAGACTAAAACTCAAAGGAAT [600] P.TEST ------CTG--ACTC-----AGTAACGA----A-GCTAAC--GCGTGAAGTTGACCGCCT----GGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAAT [600] AG.TUM --------A--CTGT---TCGGTGGCGC----A-GCTAAC--GCATTAAACATTCCGCCT----GGGGAGTACGGTCGCAAGATTAAAACTCAAAGGAAT [576] DV.DES ------TC------T---TCGGTGTCGT----A-GTTAAC--GCGTTAAGCATCCCGCCT----GGGGAGTACGGTCGCAAGGCTGAAACTCAAAGAAAT [598] BA.FRG ------CAG---------TAAGCGGCCA----A-GCGAAA--GCATTAAGTATTCCACCT----GGGGAGTACGCCGGCAACGGTGAAACTCAAAGGAAT [595] 'Zea_mays_(chloroplast)' ------GAC--CCGT---GCAGTGCTGT----A-GCTAAC--GCGTTAAGTATCCCGCCT----GGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAAT [578] T.AMIT ------GGTCTACG----CGGATCAGGGGCCCA-GCTAAC--GCGTGAAACACTCCGCCT----GGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAAT [582] [ 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400] [ . . . . . . . . . .] Homo_sapiens TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-C [838] Rattus_norvegicus TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-C [839] Xenopus_laevis TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-A [834] A._salina TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCAGGCCCGGACA----------------CTG-G-A [835] S._cerevisiae TGACGGAAGGGCACCACTAGGAGTGGAGCCTGCGGCT-AATTTGACTCAACACGGGGAAACTCACCAGGTCCAGACA----------------CAA-T-A [826] P.MICA TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACA----------------TAG-T-A [826] D.DISC TGACGGAAGGGCACACAATGGAGTGGAGCCTGCGGCTTAATTTGACTCAACTCGGGAAAACTTACCAAGCTAAGATA----------------TAG-T-A [829] T.BRUC TGACGGAATGGCACCACAAGACGTGGAGCGTGCGGTTTAATTTGACTCAACACGGGGAACTTTACCAGATCCGGACA----------------GGG-T-G [1142] E.GRAC TGACGGAATGGCACCACAAGGCGTGGAGTATGCGGCTTAATTTGACTCAACGCGGGGAATGTTACCAGGTCAGGACG----------------CAA-C-T [1142] Zea_mays TGACGGAAGGGCACCACCAGGCGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACA----------------TAG-C-A [831] D._mobilis TGGCGGGGGAGCACCACAAGGGGTGGAGCCTGCGGTTCAATTGGAGTCAACGCCGGGAATCTCACCGGGGGA-GACA----------------GCA-G-G [637] S._solfataricus TGGCGGGGGAGCACCACAAGGGGTGGAACCTGCGGCTCAATTGGAGTCAACGCCTGGAATCTTACCGGGGGA-GACC----------------GCA-G-T [635] T._tenax TGGCGGGGGGGCACCACAAGGGGTGAAGCTTGCGGCTTAATTGGAGTCAACGCCGGAAACCTTACCCGGGGC-GACA----------------GCA-G-G [638] M._vannielii TGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGGCATCTCACCAGGAGC-GACA----------------GCA-T-G [638] MB._formicicum TGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGACATCTCACCAGGGGC-GACA----------------GCA-G-A [640] MS._hungatei TGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATCGGACTCAACGCCGGAAATCTCACCGGATAA-GACA----------------GCT-G-A [613] H._volacanii TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCTCC-GACT----------------ACA-GTG [642] HC._morrhuae TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCTCCGGCACC-GACA----------------GTGTGCA [644] H.HALO TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCCCC-GACA----------------GTA-GTA [642] H._cutirubrum TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCCCC-GACA----------------GTA-GTA [642] AN._nidulans TGACGGGGGCCCGC-ACAAGCGGTGGAGTATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACAT-----CC----CCCGAAT-C-T [668] HE.CHL TGACGGGGGCCCGC-ACAAGCGTTGGAGCATGTGGTTTAATTCGACGCAACGCGAAGAACCTTACCAAGGCTTGACAT-----CC----TCTGAAT-C-C [652] Bc._subtilis TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACAT-----CC----TCTGACA-A-T [691] MY.CAP TGACGGGGACCCGC-ACAAGTGGTGGAGCATGTGGTTTAATTCGAAGCAACACGAAGAACCTTACCAGGGCTTGACAT-----CC----AGTGTAA-A-G [679] E._coli TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACAT-----CC----ACGGAAG-T-T [688] MYX.XA TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGACGCAACGCGCAGAACCTTACCTGGTCTTGACAT-----CC----TCAGAAT-C-C [688] P.TEST TGACGGGGACCCGC-ACAAGCGGTGGATGATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACAT-----GG----CAGGAAC-T-T [688] AG.TUM TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGCTCTTGACAT-----TCGGGGTTTGGGC-A-G [668] DV.DES TGACGGGGGCCCGC-ACAAGCGGTGGAGTATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTAGGTTTGACAT-----CC---ACGGAACC-C-T [687] BA.FRG TGACGGGGGCCCGC-ACAAGCGGAGGAACATGTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTAAATT-----GC----AGTGGAA-T-G [683] 'Zea_mays_(chloroplast)' TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAGGCGAAGAACCTTACCAGGGCTTGACAT-----GC----CGCGAAT-C-C [666] T.AMIT TGACGGGGGCCTGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACA----ACAAAAC-C-T [675] [ 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500] [ . . . . . . . . . .] Homo_sapiens AG-GATTGACA--G-ATTGA--TAGCTCTTTCTC-GATTC--CGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [928] Rattus_norvegicus AG-GATTGACA--G-GTTGA--TAGCTCTTTCTC-GATTC--CGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [929] Xenopus_laevis AG-GATTGACA--G-ATTGA--TAGCTCTTTCTC-GATTC--TGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [924] A._salina AG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATTC--AGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [925] S._cerevisiae AG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATTT--TGTGGGTGGTGGTGCATGGCCGTTTCTCAGTTGGTGGAGTGATTTGTCTGCTTAATTG [917] P.MICA AG-GATTGACA--G-ATTGA--TAGCTCTTTCTT-GATTC--TATGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGTGATTTGTCTGGTTAATTC [916] D.DISC AG-GATTGACA--G-ACTAA--AAGATCTTTCAT-GATTC--TATAAGTGGTGGTGCATGGTCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTCAATTC [919] T.BRUC AG-GATTGACA--G-ATGGA--GTGTTCTTTCTC-GATCC--CCTGAATGGTGGTGCATGGCCGCTTTT-GGTCGGTGGAGTGATTTGTTTGGTTGATTC [1232] E.GRAC GG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATCT--TGTGGACGGTGGTGCATGGCCGCTCCTGA-TTGGTGGAGTGATTTGTCTGGTTGATTC [1232] Zea_mays AG-GATTGACA--G-ACTGA--GAGCTCTTTCTT-GATTC--TATGGGTGGTGGTGCATGGTCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC [921] D._mobilis AT-GACGGCCA--G-GTTAA--AG-C-CTTGCCT-GACGC--GCTGAGAGGAGGTGCATGGCCGTC-GCCAGCTCGTGCTGTGAAGTGTCCGGTTAAGTC [725] S._solfataricus AT-GACGGCCA--G-GCTAA--CGAC-CTTGCCT-GACTC--GCGGAGAGGAGGTGCATGGCCGTC-GCCAGCTCGTGTTGTGAAATGTCCGGTTAAGTC [724] T._tenax AT-GAAGGCCA--G-GCTAA--CGAC-CTTGCCG-GACGA--GCTGAGAGGAGGTGCATGGCCGTC-GTCAGCTCGTGCCGTGAGGTGTCCGGTTAAGTC [727] M._vannielii AT-GACGGCCA--G-GTTGA--CGAC-CTTGCCT-GAAGC--GCTGAGAGGTGGTGCATGGCCATC-GTCAGCTCGTACCGCGAGGCGTCCTGTTAAGTC [727] MB._formicicum AT-GATAGCCA--G-GTTGA--TGAC-CTTGCTT-GACAA--GCTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [729] MS._hungatei AT-GATAGTCG--G-GATGA--AGAC-TCTACTT-GACTA--GCTGAGAGGAGGTGCATGGCCGTC-GTCAGTTCGTACTGTGAAGCATCCTGTTTAGTC [702] H._volacanii AT-GACGATCA--G-GTTGA--TGAC-CTTATCA-CGACGCTGTAGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [733] HC._morrhuae GT-GACAGTCA--G-TCCGA--TGGG-CTTACTT-GA--GCCACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [733] H.HALO AT-GACGGTCA--G-GTTGA--TGAC-CTTACCC-G-AGGCTACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [732] H._cutirubrum AT-GACGGTCA--G-GTTGA--TGAC-CTTACCC-GGAGGCTACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC [733] AN._nidulans CT-TGGAAACG--A-GAGAG--TGCC-TTCGGGA-GCGGG--G-AGACAGGTGGTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [756] HE.CHL GA-TAGAGATA--GCGGAGT--GCCC-TTCGGGGAGCAGA--G-AGACAGGTGGTGCATGGTTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [742] Bc._subtilis CC-TAGAGATA--G-GACGT--CCCC-TTCGGGG-GCAGA--G-TGACAGGTGGTGCATGGTTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [779] MY.CAP CTATAGAGATA--T-AGTAG--AGGT-T-----A-ACATT--G-AGACAGGTGGTGCATGGTTGTC-GTCAGTTCGTGCCGTGAGGTGTTGGGTTAAGTC [763] E._coli TT-CAGAGATG--A-GAATG--TGCC-TTCGGGA-ACCGT--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTC [776] MYX.XA TT-CAGAGATGAGG-GAGTG--CCCG-CAAGGGA-ACTGA--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [778] P.TEST AC-CAGAGATG--G-TTTGGTGCTCG-AAAGAGA-ACCTG--C-ACACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [778] AG.TUM TG-GAGACATT--G-TCCTT--CAGT-TAGGCTG-GCCCC--A-GAACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [756] DV.DES CC-CGAAAAGG--A-GGGGT--GCCC-TTCGGGGAGCCGT--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC [776] BA.FRG ATGTGGAAACA--T-GTCAG--TGAG-CAATCAC--CGCT--G-TGA-AGGTGCTGCATGGTTGTC-GTCAGCTCGTGCCGTGAGGTGTCGGCTTAAGTG [770] 'Zea_mays_(chloroplast)' TC-TTGAAAGA--G-AGGGG--TGCC-CTCGGGA-ACGCG--G-ACACAGGTGGTGCATGGCTGTC-GTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTC [754] T.AMIT GT-CCTTAACA--G-GATGG--TACT-------G-ACTTT--C-ATACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTC [757] [ 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600] [ . . . . . . . . . .] Homo_sapiens CGATAACGAACGAGACTCTGGCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CCCG [975] Rattus_norvegicus CGATAACGAACGAGACTCTGGCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CC-G [975] Xenopus_laevis CGATAACGAACGAGACTCCTCCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CC-C [970] A._salina CGATAACGAACGAGACTCTAGCCTGCTAA-ATAG-A-CG--ATGGATC--------------------------------C-TAGT----------GG-T [976] S._cerevisiae CGATAACGAACGAGACCTTAACCTACTAA-ATAGTG-GT--G--------------------------------------C-TAGC----------AT-T [963] P.MICA CGTTAACGAACGAGACCTTAACCTGCTAA-ATAGTT-AC--A--------------------------------------CGTAAC----------TC-C [963] D.DISC CGATAACGGACGAGACCTCGACCTGCTAA-CTAGTA-GT--ATTTATTAGTCGATATAGACGATAGCTTTTCTGGGGTTTG-GAAT----------GA-T [1003] T.BRUC CGTCAACGGACGAGATCC-AAGCTGCCCA-GTAG---GT--G--------------------------------------C-CGGG----------AT-T [1275] E.GRAC CGATAACGAGTGAGACATCTGCCTCCCACTAGCCTG-AG--G--------------------------------------C-TCGC----------AT-T [1279] Zea_mays CGTTAACGAACGAGACCTCAGCCTGCTAA-CTAGCT-AT--G--------------------------------------C-GGAG----------CC-A [967] D._mobilis CGGAAACGAGCGAGACCCCCACCC-CTAG-TTGCTA-CC--C-----------------------------------------GGG----------GC-T [768] S._solfataricus CGGCAACGAGCGAGACCCCCACCC-CTAG-TTGGTA-TT--C-----------------------------------------TGG----------AC-T [767] T._tenax CGGCAACGAGCGAGACCCCCACCC-CTAG-TTGCTA-CC--C-----------------------------------------CGC----------TC-T [770] M._vannielii AGGTAACGAGCGAGACCCGTGCCC-TATG-TTGCGA-CT--A-----------------------------------------CTT----------TC-T [770] MB._formicicum AGGCAACGAGCGAGACCCACGCCC-TTAG-TTACCA-GC--G-----------------------------------------GAT----------CC-T [772] MS._hungatei AGGCAACGAGCGAGACCCACGCGA-GCAG-TTGCCAGCT--T-----------------------------------------GAC----------CT-T [746] H._volacanii AGGCAACGAGCGAGACCCGCACTT-CTAA-TTGCCA-GCAGC-----------------------------------------CAG----------T--T [777] HC._morrhuae AGGCAACGAGCGAGACCCGCGTCC-CTAA-TTGCCA-GCAGC-----------------------------------------CAG----------CC-T [778] H.HALO AGGCAACGAGCGAGACCCGCACTC-CTAA-TTGCCA-GCGGT-----------------------------------------TAC----------CC-T [777] H._cutirubrum AGGCAACGAGCGAGACCCGCACTC-CTAA-TTGCCA-GCAGT-----------------------------------------TAC----------CC-T [778] AN._nidulans CCGCAACGAGCGCAACCCACGTTT-TTAG-TTGCCA-TC--A-----------------------------------------TTC----------AG-T [799] HE.CHL CCGCAACGAGCGCAACCCTTATCC-CTAG-TTGCCA-GCG-A-----------------------------------------GAG----------AG-T [786] Bc._subtilis CCGCAACGAGCGCAACCCTTGATC-TTAG-TTGCCA-GC--A-----------------------------------------TTC----------AG-T [822] MY.CAP CCGCAACGAACGCAACCCTTGTCG-TTAG-TTACTA-AC--A-----------------------------------------TTA----------AG-T [806] E._coli CCGCAACGAGCGCAACCCTTATCC-TTTG-TTGCCA-GC--G-G---------------------------------------TCC----------GG-C [820] MYX.XA CCGCAACGAGCGCAACCCTCGCCT-TTAG-TTGCCA-----------------------------------------------CGC----------AA-G [818] P.TEST CCGCAACGAGCGCAACCCTTGCCA-TTAG-TTGCTA--C--A-----------------------------------------TTC----------AG-T [820] AG.TUM CCGCAACGAGCGCAACCCTCGCCC-TTAG-TTGCCA-GC--A-----------------------------------------TTT----------AG-T [799] DV.DES CCGCAACGAGCGCAACCCCTATGG-ATAG-TTGCCA-GC--AAG---------------------------------------TAA----------TG-T [821] BA.FRG CCATAACGAGCGCAACCCTTATCT-TTAG-TTACTA-AC--AGG---------------------------------------TTA----------TG-C [815] 'Zea_mays_(chloroplast)' TCGCAACGAGCGCAACCCTCGTGT-TTAG-TTGCCA-CT--A------------------------------------------TG----------AG-T [796] T.AMIT CTATAACGAGCGAAACCCTCGTTT-TGTG-TTGCTG-AG--A-C---------------------------------------ATGCGC????GTGCG-T [811] [ 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700] [ . . . . . . . . . .] Homo_sapiens AGCGGTCGGCGT---------------------------------------------------------------------------CCCCC-------- [992] Rattus_norvegicus AGCGCTCGGCGT---------------------------------------------------------------------------CCCCC-------- [992] Xenopus_laevis GGCGGTCGGCGT---------------------------------------------------------------------------CCA---------- [985] A._salina GG-----ATCGC---------------------------------------------------------------------------T------------ [984] S._cerevisiae TG---CTGGTTA---------------------------------------------------------------------------TCC---------- [975] P.MICA GG---TTACGTG---------------------------------------------------------------------------GGC---------- [975] D.DISC TTCGGTCATCTC---------------------------------------------------------------------------CTGCTTCAAGGAG [1028] T.BRUC GT---CCACACA----------GGACAGCAGTCCCTCCGGC-----GGGGATTTTTTCCCCAACG-GTGGTCGTCATCCTTCTTTTTACA---------- [1346] E.GRAC TG---GTAGGGTTCGGCTGCTCGG-TGGCAGCCCC-CTGGCAACAGGGGGAGATGTACCGGTGCATGCTCCCGAGAGCCTCCAGT--TCA---------- [1362] Zea_mays TC---CCGCTAG---------------------------------------------------------------------------TTA---------- [979] D._mobilis AC---GGCTCCG---------------------------------------------------------------------------GGG---------- [780] S._solfataricus CC---CGGTCCA---------------------------------------------------------------------------GAA---------- [779] T._tenax TC---GGGGCGG---------------------------------------------------------------------------GGG---------- [782] M._vannielii CC---GGAA-GG---------------------------------------------------------------------------TAA---------- [781] MB._formicicum TC---GGGATGC---------------------------------------------------------------------------CGG---------- [784] MS._hungatei CG---GGTT-GA---------------------------------------------------------------------------TGG---------- [757] H._volacanii TC---GACTGGC---------------------------------------------------------------------------TGG---------- [789] HC._morrhuae TG---TGCTGGC---------------------------------------------------------------------------TGG---------- [790] H.HALO TT---GGGTAGC---------------------------------------------------------------------------TGG---------- [789] H._cutirubrum TT---GGGTAGC---------------------------------------------------------------------------TGG---------- [790] AN._nidulans T---------------------------------------------------------------------------------------GG---------- [802] HE.CHL C---------------------------------------------------------------------------------------GG---------- [789] Bc._subtilis T---------------------------------------------------------------------------------------GG---------- [825] MY.CAP T---------------------------------------------------------------------------------------GA---------- [809] E._coli C---------------------------------------------------------------------------------------GG---------- [823] MYX.XA T---------------------------------------------------------------------------------------GG---------- [821] P.TEST T---------------------------------------------------------------------------------------GA---------- [823] AG.TUM T---------------------------------------------------------------------------------------GG---------- [802] DV.DES T---------------------------------------------------------------------------------------GG---------- [824] BA.FRG T---------------------------------------------------------------------------------------GA---------- [818] 'Zea_mays_(chloroplast)' T---------------------------------------------------------------------------------------TG---------- [799] T.AMIT G---------------------------------------------------------------------------------------CC---------- [814] [ 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800] [ . . . . . . . . . .] Homo_sapiens -------------------------------AA----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA---CCCGAGATTGA-GCAATAACAGG [1046] Rattus_norvegicus -------------------------------AA----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA---CC-GAGATTGA-GCAATAACAGG [1045] Xenopus_laevis --------------------------------A----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA--CAC-GAGATCGA-GCAATAACAGG [1038] A._salina -------------------------------------CTTCTTAGAGGGACAAG---TGG--CG-TC-TAGCCA--TAT-GAGAGTGA-GCAATAACAGG [1036] S._cerevisiae --------------------------------A----CTTCTTAGAGGGACTAT---CGG--TT-TC-AAGCCG-ATGG-AAGTTTGAGGCAATAACAGG [1030] P.MICA --------------------------------A----ACTTTTAGAGGGACTTT---GCG--TG-TC-TAACGC-AAGG-AAGTTTGAGGCAATAACAGG [1030] D.DISC TGTGTAGTCTGACTCGATAGGTACGAATTAAAA----CTTCTTAGAGGGACTAC---CTG--CC-TC-AAGCAG-GCGG-AAGTCCGAGGCAATAACAGG [1115] T.BRUC --------------------------------GGCCCCTTCTCTGCGGGATTCC---TTGCTTT-TC-GCGCAA-GGTG-AGATTTTGGGCAACAGCAGG [1407] E.GRAC --------------------------------G----CTTCTCTGAGGTGCTGTGTCCGC--CA-CA-AAGGGC-ATGC-ATGCTAGAGCCAACAGCAGG [1420] Zea_mays --------------------------------G----CTTCTTAGAGGGACTAT---GGC--CG-TT-TAGGCC-G-CG-AAGTTTGAGGCAATAACAGG [1033] D._mobilis -------------------------------------CACACTAGGGGGACTGC---CGC--CG-TTTAAGGCG-GAGG-AAGGAGGGGGCCACGGCAGG [835] S._solfataricus --------------------------------C----CACACTAGGGGGACTGC---CGG--CG-T--AAGCCG-GAGG-AAGGAGGGGGCCACGGCAGG [833] T._tenax --------------------------------G----CACACTAGGGGGACTGC---CGG--CG-T--AAGCCG-GAGG-AAGGAGGGGGCGACGGCAGG [836] M._vannielii --------------------------------G----CACTCATAGGGGACCGC---TAG--CGCT--AAGCTA-GAGG-AAGGAGCGGGCAACGATAGG [836] MB._formicicum --------------------------------G----CACACTAAGGGGACCGC---CAG--TGAT--AAACTG-GAGG-AAGGAGTGGACGACGGTAGG [839] MS._hungatei --------------------------------G----GACACTGCTCGGACCGC---CTC--TGCT--AAAGGG-GAGG-AAGGAATGGGCAACGGTAGG [812] H._volacanii --------------------------------G----TACATTAGAAGGACTGC---CGC--TG-CT-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG [844] HC._morrhuae --------------------------------G----TACATTAGGGAGACTGC---CGT--CG-CT-AAGACG-GAGG-AAGGAACGGGCAACGGTAGG [845] H.HALO --------------------------------G----TACATTAGGTGGACTGC---CGC--TG-CC-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG [844] H._cutirubrum --------------------------------G----TACATTAGGTGGACTGC---CGC--TG-CC-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG [845] AN._nidulans --------------------------------G----CACTCTAGAGAAACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGTGGACGACGTCAAG [857] HE.CHL --------------------------------G----GACTCTAGGGAGACTGC---CCG--GGAC--GACCGG-GAGG-AAGGCGGGGATGACGTCAAA [844] Bc._subtilis --------------------------------G----CACTCTAAGGTGACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGGGGATGACGTCAAA [880] MY.CAP --------------------------------G----AACTCTAACGAGACTGC---TAG--TG-T--AAGCTA-GAGG-AAGGTGGGGATGACGTCAAA [863] E._coli --------------------------------G----AACTCAAAGGAGACTGC---CAG--TGAT--AAACTG-GAGG-AAGGTGGGGATGACGTCAAG [878] MYX.XA --------------------------------A----T-CTCTAGAGGGACTGC---CGG--TGTT--AAACCG-GAGG-AAGGTGGGGATGACGTCAAG [875] P.TEST --------------------------------G----CACTCTAATGGGACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGGGGATGACGTCAAG [878] AG.TUM --------------------------------G----CACTCTAAGGGGACTGC---CGG--TGAT--AAGCCGAGAGG-AAGGTGGGGATGACGTCAAG [858] DV.DES --------------------------------G----CACTCTATTCAGACTGC---CCG--GGTT--AACCGG-GAGG-AAGGTGGGGACGACGTCAAG [879] BA.FRG --------------------------------G----GACTCTAGAGAGACTGC---CGT--CGTA--AGATGT-GAGG-AAGGTGGGGATGACGTCAAA [873] 'Zea_mays_(chloroplast)' --------------------------------G----AACCCTGAACAGACCGC---CGG--TGTT--AAGCCG-GAGG-AAGGAGAGGATGAGGCCAAG [854] T.AMIT --------------------------------G----CACTCACGAGGGACTGC---CAG--TGAG--ATACTG-GAGG-AAGGTGGGGATGACGTCAAG [869] [ 1810 1820 1830 1840 1850 1860 1870 1880 1890 1900] [ . . . . . . . . . .] Homo_sapiens TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTG-TGCCTA------------------------CCCTACGCC [1120] Rattus_norvegicus TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTG-TGCCTA------------------------CCCTACGCC [1119] Xenopus_laevis TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGAACGGATCAGCGTG-TGTCTA------------------------CCCTGCGCC [1112] A._salina TCTGTGATGCCCTTAGA-TGTCCTGGGCCGCACGCGCGCTACACTGGAAGAATCAGCGCG-T--CC-------------------------TCCCTGTCC [1107] S._cerevisiae TCTGTGATGCCCTTAGAACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAG-T--CTA------------------------ACCTTGGCC [1103] P.MICA TCTGTGATGCCCTTAGA-TGTTCTGGGCTGCACGCGCGCTACACTGATGCGTTCAACGAG-T--TTA----------------------TGCACTTGCCC [1104] D.DISC TCTGTGATGCCCTTAGA-TACCTTGGGCCGCACGCGCGCTACAATGTAGGAAACAAAAAG-G--CT--------------------------CCTGGTCC [1185] T.BRUC TCTGTGATGCTCCTCAA-TGTTCTGGGCGACACGCGCACTACAATGTCAGTGAGAACAAG-AGTCCGAGCGGCACTTCACAATGTCGCTCCCGCTTGATC [1505] E.GRAC TCTGTGATGCTCCCAGA-TGTCCTGGGCCGCACGCGCACTACATTGTCACAGTGAAGGTG-T--CGA-------CATGCCCACTCCGGTGGGCCCTGGCC [1509] Zea_mays TCTGTGATGCCCTTAGA-TGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCAACGAG-TATATA------------------------GCCTTGGCC [1107] D._mobilis TCAGC-ATGCCCCGAAC--CCCCCGGGCTACACGCGGGCTACAATGGCGGGGACAGCGGGAT--CCG------------------------ACC----CC [902] S._solfataricus TCAGC-ATGCCCCGAAA--CTCCCGGGCCGCACGCGGGTTACAATGGCAGGGACAACGGGAT--GCT------------------------ACC----TC [900] T._tenax TCAGT-ATGCCCCGAAA--CCCCGGGGCTGCACGCGAGCTGCAATGGCGGGGACAGCGGGAT--CCG------------------------ACC----CC [903] M._vannielii TCCGC-ATGCCCCGAAT--CTCCTGGGCTACACGCGGGCTACAATGGCTAGGACAATGGGCT--GCT------------------------ACC----CT [903] MB._formicicum TCCGT-ATGCCCCGAAT--CCCCTGGGCTACACGCGGGCTACAATGGTTAGGACAATGGGTT--CCG------------------------ACA----CT [906] MS._hungatei TCAGC-ATGCCCCGAAT--TATCCGGGCTACACGCGGGCTACAATGGACAGGACAATGGGTT--TCG------------------------ACA----CC [879] H._volacanii TCAGT-ATGCCCCGAAT--GAGCTGGGCTACACGCGGGCTACAATGGTCGAGACAATGGGTT--GCT------------------------ATC----TC [911] HC._morrhuae TCAGT-ATGCCCCGAAT--GTGCCGGGCGACACGCGGGCTACAATGGCCGAGACAGTGGGAC--GCT------------------------ACC----CC [912] H.HALO TCAGT-ATGCCCCGAAT--GGGCTGGGCAACACGCGGGCTACAATGGTCGAGACAATGGGAA--GCC------------------------ACT----CC [911] H._cutirubrum TCAGT-ATGCCCCGAAT--GGGCTGGGCAACACGCGGGCTACAATGGTCGAGACAATGGGAA--GCC------------------------ACT----CC [912] AN._nidulans TCATC-ATGCCCCTTAC--ATCCTGGGCTACACACGTACTACAATGCTCCGGACAGCGAGAC--GCG------------------------AAG----CC [924] HE.CHL TCATC-ATGCCCCTTAT--GTCTTGGGCTACACACGTGCTACAATGGGCGGTACAAACCGAA--GCG------------------------AAG----CC [911] Bc._subtilis TCATC-ATGCCCCTTAT--GACCTGGGCTACACACGTGCTACAATGGACAGAACAAAGGGCA--GCG------------------------AAA----CC [947] MY.CAP TCATC-ATGCCCCTTAT--GTCCTGGGCTACACACGTGCTACAATGGCTGGTACAAAGAGTT--GCA------------------------ATC----CT [930] E._coli TCATC-ATGGCCCTTAC--GACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAA--GCG------------------------ACC----TC [945] MYX.XA TCCTC-ATGGCCTTTAT--GACCAGGGCTACACACGTGCTACAATGGCCGGTACAGAGCGTT--GCC------------------------AAC----CC [942] P.TEST TCCTC-ATGGCCCTTAT--AGGTGGGGCTACACACGTCATACAATGGCTGGTACAAAGGGTT--GCC------------------------AAC----CC [945] AG.TUM TCCTC-ATGGCCCTTAC--GGGCTGGGCTACACACGTGCTACAATGGTGGTGACAGTGGGCA--GCG------------------------AGA----CA [925] DV.DES TCATC-ATGGCCCTTAC--GCCTAGGGCTACACACGTACTACAATGGCGCGCACAAAGGGGA--GCG------------------------AGA----CC [946] BA.FRG TCAGC-ACGGCCCTTAC--GTCCGGGGCTACACACGTGTTACAATGGGGGGTACAGAAGGCA--GCT------------------------AGC----GG [940] 'Zea_mays_(chloroplast)' TCATC-ATGCCCCTTAT--GCCCTGGGCGACACACGTGCTACAATGGGCGGGACAAAGGGTC--GCG------------------------ATC----TC [921] T.AMIT TCCGC-ATGGCCCTTAT--GGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAA--GCA------------------------AGG----CT [936] [ 1910 1920 1930 1940 1950 1960 1970 1980 1990 2000] [ . . . . . . . . . .] Homo_sapiens -GGCAGGCGCGGG-TAACCCGTTGAA-CCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA [1216] Rattus_norvegicus -GGCAGGCGCGGG-TAACCCGTTGAA-CCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA [1215] Xenopus_laevis -GACAGGTGCGGG-TAACCCGCTGAA-CCCCGTTCGTGATAGGGATCGGGGATTGCAATTATTTCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA [1208] A._salina -GAGAGGACCGGG-TAACC-GCTGAA-CCTCTTCCGTGGTTGGGATTGGGGACTGCAAGGATC-CCCAT-GAACCAGGAATCCCTAGTAGGCGCAAGTCA [1201] S._cerevisiae -GAGAGGTCTTGG-TAATCTTGTGAA-ACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATTGCTCTT-CAACGAGGAATTCCTAGTAAGCGCAAGTCA [1199] P.MICA -GATAGGGTTTGGGTAATCTTTTTAA-ATCGCATCGTGATGGGGATAGATTATTGCAATTATTAATCTT-CAACGAGGAATTCCTAGTAAGCGCGAGTCA [1201] D.DISC -GGAAGGATTGGG-TAATCATTTGAA-TTTCCTACGTAACTGGGCTTGATCTTTGTAATTATTGATCAT-AAACGAGGAATTCCTTGTAAGCGTAAGTCA [1281] T.BRUC -AAAAGAGCGGGG-AAACCACGGAATCACGTAGACCCACTTGGGACCGAGTATTGCAATTATTGGTCGCGCAACGAGGAATGTCTCGTAGGCGCAGCTCA [1603] E.GRAC TGAAGAGGCTGGG-AAATCCTGCAAG-CCTGTGACGTACTGGGGATAGATGGTTGCAACTGTCTGCCTT-GAACGTGGAATGCCTAGTATGCCTGGGTCA [1606] Zea_mays -GACAGGC-CGGT-AATCTTGGGAAA-TTTCATGCGTGATGGGGATAGATCATTGCAATTGTTGGTCTT-CAACGAGGAATGCCTAGTAAGCGCGAGTCA [1202] D._mobilis -GAAAGGGGAGGC-GAATCCCTC-AA-ACCCCGCCGTGGTTGGGATCGAGGGCTGCAACTCGCCCTCGT-GAACGAGGAATCCCTAGTAACCGCGCGTCA [997] S._solfataricus -GAAAGGGGGAGC-CAATCCTT--AA-ACCCTGCCGCAGTTGGGATCGAGGGCTGAAACCCGCCCTCGT-GAACGAGGAATCCCTAGTAACCGCGGGTCA [994] T._tenax -GAAAGGGGGAGG-CAATCCCGT-AA-ACCCCGCCCCAGTAGGGATCGAGGGCTGCAACTCGCCCTCGT-GAACGTGGAATCCCTAGTAACCGCGTGTCA [998] M._vannielii -GAAAAGGGACGC-GAATCTCCG-AA-ACCTAGTCGTAGTTCGGATCGTGGGCTGTAACTCGCCCACGT-GAAGCTGGAATCCGTAGTAATCGCAGTTCA [998] MB._formicicum -GAAAGGTGGAGG-TAATCTCCT-AA-ACCTGGCCTTAGTTCGGATTGAGGGCTGTAACTCGCCCTCAT-GAAGCTGGAATGCGTAGTAATCGCGTGTCA [1001] MS._hungatei -GAGAGGTGAGGA-TAATCTCCT-AA-ACCTGTCCGAAGTTCGGATTGCGGGTTGTAACTCACCCGCAT-GAAGCTGGAATCCGTAGTAATCGCGTTTCA [974] H._volacanii -GAAAGAGAACGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCATTTCA [1006] HC._morrhuae -GAGAGGGGACGC-TAATCTCCT-AA-CCTCGGTCGTAGTTCGGATTGCGGGTTGAAACCCACCCGCAT-GAAGCTGGATTCGGTAGTAATCGCATTTCA [1007] H.HALO -GAGAGGAGGCGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCGTGTCA [1006] H._cutirubrum -GAGAGGAGGCGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCGTGTCA [1007] AN._nidulans -GCGAGGTGAAGC-AAATCTCCC-AA-ACCGGGGCTCAGTTCAGATTGCAGGCTGCAACTCGCCTGCAT-GAAGGCGGAATCGCTAGTAATCGCAGGTCA [1019] HE.CHL -GAGAGGTGGAGC-GAACCGGAG-AA-AGCCGTTCCCAGTTCGGATTGCTCTCTGCAACTCGAGAGCAT-GAAGGCGGAATCGCTAGTAATCGCGGGTCA [1006] Bc._subtilis -GCGAGGTTAAGC-CAATCCCAC-AA-ATCTGTTCTCAGTTCGGATCGCAGTCTGCAACTCGACTGCGT-GAAGCTGGAATCGCTAGTAATCGCGGATCA [1042] MY.CAP -GTGAAGGGGAGC-TAATCTCAA-AA-AACCAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT-GAAGCCGGAATCACTAGTAATCGCGAATCA [1025] E._coli -GCGAGAGCAAGC-GGACCTCAT-AA-AGTGCGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCAT-GAAGTCGGAATCGCTAGTAATCGTGGATCA [1040] MYX.XA -GCGAGGGGGAGC-TAATCGCAT-AA-AACCGGTCTCAGTTCAGATTGGAGTCTGCAACTCGACTCCAT-GAAGGAGGAATCGCTAGTAATCGCAGATCA [1037] P.TEST -GCGAGGGGGAGC-TAATCCCAT-AA-AGCCAGTCGTAGTCCGGATCGCAGTCTGCAACTCGACTGCGT-GAAGTCGGAATCGCTAGTAATCGTGGATCA [1040] AG.TUM -GCGATGTCGAGC-TAATCTCCA-AA-AGCCAT-CTCAGTTCGGATTGCACTCTGCAACTCGAGTGCAT-GAAGTTGGAATCGCTAGTAATCGCAGATCA [1019] DV.DES -GCGAGGTGGAGC-CAATCCCAA-AA-AACGCGTCCCAGTCCGGATTGCAGTCTGCAACTCGACTGCAT-GAAGTTGGAATCGCTAGTAATTCGAGATCA [1041] BA.FRG -GTGACCGTATGC-TAATCCCA--AA-ATCCTCTCTCAGTTCGGATCGAAGTCTGCAACCCGACTTCGT-GAAGCTGGATTCGCTAGTAATCGCGCATCA [1034] 'Zea_mays_(chloroplast)' -GCGAGGGTGAGC-TAACTCCAA-AA-ACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCAT-GAAGCAGGAATCGCTAGTAATCGCCGGTCA [1016] T.AMIT -GTAAGGCGGAGC-GAATC-CGG-AA-AGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACAT-GAAGTTGAAATCGCTAGTAATCGCGGATCA [1030] [ 2010 2020 2030 2040 2050 2060 2070 2080 2090 2100] [ . . . . . . . . . .] Homo_sapiens TA-AGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG [1315] Rattus_norvegicus TA-AGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG [1314] Xenopus_laevis TA-AGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG [1307] A._salina TT-AGCTTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGATTTAGCTTGATCCTTTAGAGGAAGTAAAAGTCG [1300] S._cerevisiae TC-AGCTTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTAGTACCGATTGAATGGCTTAGCTTGGTCATTTGGAGGAACTAAAAGTCG [1298] P.MICA TC-AGCTCGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAGTG-----ACCTTATCACTTAGAGGAAGGAGAAGTCG [1295] D.DISC TT-ACCTTATGCTGAATATGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATCGAATGATACGGTCTCATTGTTTAGAGGAAGGAGAAGTCG [1380] T.BRUC TC-AAACTGTGCCGATTACGTCCCTGCCATTTGTACACACCGCCCGTCGTTGTTTCCGAT--GATGGTGCAAATTGCTTCAATAGAGGAAGCAAAAGTCG [1700] E.GRAC TC-AGCCCAGACCGATTGTGTCCCTGCCATTTGTACACACCGCCCGTCGTTGCTACCGATGG--TGGCTGGAGTCCAGCCACTAGAGGAAGCAAAAGTCG [1703] Zea_mays TC-AGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGCCTTATCATTTAGAGGAAGGAGAAGTCG [1301] D._mobilis AC-ATCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCGCTCCACCCGAGGGGAGG-GGGAGCTCCCCCTCCCTGAGGGGGGAGAAGTCG [1095] S._solfataricus AC-AACCCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCGCTCCACCCGAGCGCGAA-AGGGGCTCCTTTCCCGCGAGGGGGGAGAAGTCG [1092] T._tenax CC-AACGCGCGGTGAATACGTCCCTGCCCCTTGCACACACCGCCCGTCGCACCACCCGAGGGAGTT-CTCTGCAGAGAACTCCCGAGGGGGGTGAAGTCG [1096] M._vannielii TA-ATACTGCGGTGAATGTGTCCCTGCTCCTTGCACACACCGCCCGTCACACCACCCGAGTTGGGT-TCAGGCCTGGGCTCAGCGAGGGGGGTGAAGTCG [1096] MB._formicicum TA-ACCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCACGCCACCCAAAAAGGGT-TTGGATCTAGGTTCTTTGAGGAGGGCGAAGTCG [1099] MS._hungatei AC-ATAGCGCGGTGAATATGTCCCTGCTCCTTGCACACACCGCCCGTCAAACCACCCGAGTGAGGT-CTTGATCTGGGTTTTGCAAGGGGGGTTAAGTCG [1072] H._volacanii AT-AGAGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAAGCACCCGAGTGAGGT-CCGGA-------TTCGCAAGGGGGCTTAAGTCG [1097] HC._morrhuae GA-AGAGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGAGGT-CCGGA-------TTCGCAAGGGGGATTAAGTCG [1098] H.HALO GC-AGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGGGGT-TCGGA-------TCCGCAAGGGGGATTAAGTCG [1097] H._cutirubrum GC-AGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGGGGT-TCGGA-------TCCGCAAGGGGGATTAAGTCG [1098] AN._nidulans GC-ATACTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGAAGTTGGCC-ATGCCGGTAGGGCTGATGACTGGGGTGAAGTCG [1117] HE.CHL GC-ATACCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAAAGTCGGCA-ACACCGGTGGGGTCGATGATTGGGGTGAAGTCG [1104] Bc._subtilis GC-ATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTA-ACACCGGTGGGACAGATGATTGGGGTGAAGTCG [1140] MY.CAP GCTATGTCGCGGTGAATACGTTCTCGGGTCTTGTACACACCGCCCGTCACACCATGAGAGTTGGTA-ATACCGGTAGGACTAGCGATTGGGGTGAAGTCG [1124] E._coli GA-ATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTT-GCAAATTTGTGATTCATGACTGGGGTGAAGTCG [1138] MYX.XA GC-ACGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTCGATT-GCTCCGGAGTGGTCGGTAACTGGGGTGAAGTCG [1135] P.TEST GA-ATGTCACGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCATGGGAGCGGGTC-TCGCCGGCGGGGTTCGTGACTGGGGTGAAGTCG [1138] AG.TUM GC-ATGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTT-TTACCGGTAGGGTCAGCGACTGGGGTGAAGTCG [1117] DV.DES GC-ATGCTCGGGTGAATGCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAAAGTCGGTT-TTACCGGTAGGGCCGATGATTGGGGTGAAGTCG [1139] BA.FRG GCCACGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGGGAGCCGGGG-GTACCGGTAAAACTGGTGACTGGGGCTAAGTCG [1133] 'Zea_mays_(chloroplast)' GCCATACGGCGGCGAATCCGTTCCCGGGCCTTGTACACACCGCCCGTCACACTATAGGAGCTGGCC-AGGTTGGCTAGGCTTGCGACTGGAGTGAAGTCG [1115] T.AMIT GC-ATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTT-TCGCCGGTGGGGTCTTCGACTGGGGTGAAGTCG [1128] [ 2110 2120 2130 2140 ] [ . . . . ] Homo_sapiens TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1355] Rattus_norvegicus TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1354] Xenopus_laevis TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1347] A._salina TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1340] S._cerevisiae TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA------- [1338] P.MICA TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTC------- [1335] D.DISC TAACAAGGTATCCGTAGGTGAACCTGCGGATGGATCATTTT------ [1421] T.BRUC TAACAAGGTAGCTGTAGGTGAACCTGCAGCTGGATCATTT------- [1740] E.GRAC TAACAAGGTTGCTGTAGGTGAACCTGCAGCAGGATCATTG------- [1743] Zea_mays TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG------- [1341] D._mobilis TAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATCACCTCCT---- [1138] S._solfataricus TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCA----- [1134] T._tenax TAACAAGGTAGCCGTAGGGGAACCTGCTTCTGGATCACCTCC----- [1138] M._vannielii TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCC----- [1138] MB._formicicum TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT---- [1142] MS._hungatei TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1115] H._volacanii TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1140] HC._morrhuae TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1141] H.HALO TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1140] H._cutirubrum TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT---- [1141] AN._nidulans TAACAAGGTAGCCGTACCGGAAGGTGTGGCTGGATCACCTCCTTT-- [1162] HE.CHL TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT [1151] Bc._subtilis TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT [1187] MY.CAP TAACAAGGTATCCGTACGGGAACGTGCGGATGGATCACCTCCTTTCT [1171] E._coli TAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTA-- [1183] MYX.XA TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTTCT [1182] P.TEST TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT [1185] AG.TUM TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTTCT [1164] DV.DES TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTT-- [1184] BA.FRG TAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTTTCT [1180] 'Zea_mays_(chloroplast)' TAACAAGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTTT-- [1160] T.AMIT TAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAATCC----- [1170] ; END; BEGIN CODONS; CODESET * UNTITLED = Universal: all ; END; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; END; BEGIN TREES; TRANSLATE 1 Homo_sapiens, 2 Rattus_norvegicus, 3 Xenopus_laevis, 4 A._salina, 5 S._cerevisiae, 6 P.MICA, 7 D.DISC, 8 T.BRUC, 9 E.GRAC, 10 Zea_mays, 11 D._mobilis, 12 S._solfataricus, 13 T._tenax, 14 M._vannielii, 15 MB._formicicum, 16 MS._hungatei, 17 H._volacanii, 18 HC._morrhuae, 19 H.HALO, 20 H._cutirubrum, 21 AN._nidulans, 22 HE.CHL, 23 Bc._subtilis, 24 MY.CAP, 25 E._coli, 26 MYX.XA, 27 P.TEST, 28 AG.TUM, 29 DV.DES, 30 BA.FRG, 31 'Zea_mays_(chloroplast)', 32 T.AMIT ; TREE mp_tree_1 = [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((25,27),(26,(29,(28,32))))))))); TREE mp_tree_2 = [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((26,(25,27)),(29,(28,32)))))))); TREE * UNTITLED = [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((25,27),(26,(29,(28,32))))))))); END; BEGIN MACCLADE; Version 3.05; LastModified -1425155107; Singles 1000&/0; END;