#NEXUS 


BEGIN DATA;
DIMENSIONS  NTAX=8 NCHAR=116;

[!Data on cytochrome b from 

Thomas, R.H., W. Schaffner, A.C. Wilson, and S. PŠŠbo.  1989.  DNA phylogeny of the extinct marsupial wolf.  Nature, 340: 465-467.

See p. 22 of the MacClade book.]
FORMAT DATATYPE=DNA  MISSING=? GAP=-  MATCHCHAR=. ;OPTIONS  MSTAXA=UNCERTAIN ;

MATRIX
[                       10        20        30        40        50        60        70        80        90        100       110    ]
[                       .         .         .         .         .         .         .         .         .         .         .      ]

Thylacinus     CTTTGGATCCTTACTAGGAATCTGCCTAGTCATTCAAATCTTAACAGGCTTATTTCTAGCAATACATTACACATCAGACACATCAACTGCCTTCTCCTCAGTAGCACATATCTGTC   [116]
Sarcophilus    ...C..G..T...T.......A......A.T........TC.C..C..AC....C...........C.....C..T.......TC..C.....T.....C.....C..C..T....   [116]
Dasyurus       .........YC..T.....G.A......A.T.........C.C......C....C...........C.....T.........CTT..C..T........C.....C..C..T..C.   [116]
Echymipera     T.....C..A...............T.......C......C.C.....AC....C.....C...........G........CCT...A..T.....A..C..G..T..C..T..C.   [116]
Trichosurus    ...C.....AC.......C......T..ACT..A......C.T...........CT.......G..C.....CG.T..T...G....A..T.....A........C..C.......   [116]
Phalanger      .........AC..T....TT........ACA..C...............C.....T..........C.....TC.C...........A..T..T..A...A.C..C..C....C..   [116]
Philander      T.....T..AC.T........A......A.T.........C.C......C.....T....T........T............CT...C..A..T..A........C........C.   [116]
Bos            T..C..T...C.C..G............A..C.A......C.C......C....C...........C........C......A....A..A........T..TA.C........C.   [116]
;
END;


BEGIN CODONS;
CODONPOSSET * UNTITLED = 
		N: 1 116, 
		1: 2-113\3, 
		2: 3-114\3, 
		3: 4-115\3;
CODESET * UNTITLED = mtDNA.mam: all ;
END;

BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
END; 

BEGIN TREES; 

	TRANSLATE
		1	Thylacinus,
		2	Sarcophilus,
		3	Dasyurus,
		4	Echymipera,
		5	Trichosurus,
		6	Phalanger,
		7	Philander,
		8	Bos
	;
	TREE  * Fig._2_tree =  [&R] ((((1,(3,2)),((5,6),4)),7),8);

END;



BEGIN MACCLADE;
Version 3.05;
LastModified -1425155089;
Singles 0000&/0;
END;