LOCUS Zea_mays_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Zea mays (maize) -- mitochondrion. REFERENCE 1 AUTHORS Chao,S., Sederoff,R. and Levings,C.S.III. TITLE Nucleotide sequence and evolution of the 18S ribosomal RNA gene in maize mitochondria JOURNAL Nucleic Acids Res. 12, 6629-6644 (1984) COMMENT Corresponding GenBank entry: X00794 common_name= maize BASE COUNT 494 a 464 c 603 g 407 u 3474 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .AUCAUAGUC 121 AAAA-UCUGA GUUUGA-UCC UGGCUCAGAA -GGAACGCU- AGCUA-UAU- G--------- 181 ---------- ---------- ---------- ---------- CUUAA-CACA UGC-AA-GUC 241 GAACG-UU-- GU--UUU-C- -GG------- ---------- ---------- --------GG 301 AGCUGGGCAG AAGGAAAAGA GGCUCCUAGC UAAA-GUUGU CUCGCCCUGC CUG------- 361 CAGGGCGCGC GCAACGGCUU UGACCUAACG GCCUCCGUUU GCUGGAAUCG GAAUAG---- 421 ----UUGAGA ACAA--AGU- -GGC--GAAC GGGUG--CGU AAC--GCGUG -GGAAUC--- 481 -UGC--CGAA C---AG-U-U CGG-G----- ------CCAA AU-------- ------CCUG 541 A--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --A------- 781 ---------- ---GAAA--- ---------- ---------- ---GCU---- ---------C 841 AAA------- ---AGCG-CU -GUUUG---- -AU---GAGC C-UGC-GU-- -AGU-AUU-- 901 --A------- ---------- ---------- ---GGUAG-U UGGUCAG--- ---------- 961 GUAAAGG--- ---------- CU--GAC-CA -A-GCC-AAU GA--UGCUUA --GCUG---G 1021 UCU-UUUC-G GAUGAUCAGC -CAC-ACU-G GGACUGAGAC ACG-GCCCGG ACUCC-CACG 1081 --GGGG---- -----GCA-G CAGUG-GGGA AUC-UUGGAC AA-UGGGC-- ------GAAA 1141 ---------- ---GCCCG-- --AUCCA-G- C-AA-UAU-C GC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-G 1261 AG-U---GAA GAA-GGGC-- -------AAU GCC------- --GCUU--GU AAA--G-CUC 1321 -UUUCG-UCG AGUGCGC--- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---GAUCAUG 1501 A--------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------CAGG A-CUCGA-GG 1681 -AAGAAGCCC C--GGCUAA- C---UCCGUG -CCAGCAGCC GC-GGUAA-G ACGG-GG--- 1741 -GGG-GCA-- AGUGUUCUUC -GGAAUGA-C UGGGC-GUAA AG-GGCACGU A-GGCG---- 1801 ---------- ---------- ------GUG- -----AAU-C GGG----UUG AAAGUG--A- 1861 AAGU------ -------CGC CA-------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------AAA 1981 AG-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -------UGG CG-------- --GA-A--UG 2101 CUC-UCGA-A A-CCA----A UU------CA CUUG--AGU- GAG-ACAGA- G-GAGAGU-- 2161 -----GGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUUC--GUGU --GUA-GGG- -GUGAAA--- 2281 UCC-GUAGAU --CUAC-G-A A-G-GA-AC- GCCA------ ---------- ---------- 2341 ---------- ------AAAG C-GAAG--GC A-GCUCUCU- -GGGUCCCU- --------AC 2401 C--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CU---GGG-- -GUG---C-- GAAAGCAUGG 2641 G-GAGCGAA- CAGGAUUAGA UAC--CC-UG -GUAGUC-CA UGCCGUAAAC GAU--GAG-- 2701 ---UG-UU-- -CGC--CCUU G-GU----CU GUCUA----- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ------CGCU ACGC------ ---------- ---------- 2941 ---------- ---------- ---------U ACGCGG---- --AUCAGGG- -GC-CCAGC- 3001 ------UAAC ---------- -GCGUG-AAA CACUCCG-CC UGG-GGAGU- --AC---GGU 3061 C--GCAA-GA CC-GAA-ACU CAAAGGAA-U UGA------C GGGG-GCCUG ---CA-CA-- 3121 -AGCGGUG-G AGCAUGUGGU UUAAU-UCG- AUA-CAACG- --CGCA---- ------AAAC 3181 CUUA--CCAG CCCUUGAC-- ---------- -------AUA UG-AA----- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- --------CA ACAAAACCUG 3361 U--------- ---CUUUA-- ---------- ACGGGAUGGU ACUUACU--- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ----UUC-A- UA-C------ ---AGGU-GC 3601 UGCA-UG-GC -U----GUCG -UCA------ GCUC--GU-G UC--GUGA-- -GAUGU---- 3661 ---------- ---------- ---UUGG--- --------UC AAGU------ -----CCU-A 3721 -------UA- -AC-GAGC-G AAAC-CCUCG ---------- -----UUUUG UG-UUGC--- 3781 ---------- ---------- ---------- --UGAGACAU GCGCCUAAGG AGAAAU---- 3841 ---------- ---AGCCGAG GAGCCGAGUG ACGUGCCAGC GCUACUACUU GAUU----GA 3901 GUGCCAGCAC GUAGCUGUG- CUUUCCGCAA -GAAUUUCAC CAUUGGGAGC CUC------- 3961 -------GAA GCACUUUCAC GUGUGAACCG AAGUCGUCUU GCC------- ---------- 4021 ---------G AACU------ ---------- ---------- ---------- CAAGACCCAC 4081 GGAGA----- ---------- ---------- --------CC UACCUAUAGU GACGUCAAAG 4141 UACCAGUGAG CAUGGAGGUU UGG--UU-AG GC-UUGGUUA CGACGACGUC GAGUUGGCGG 4201 CGGAGGAAGA CUCGGCAUGA AGGCCAGCCG CCCGGUGGUG UGGUACGUAG UGGUAAUAGU 4261 ACGCGCCCC- ------GCUC CGAAACAAAG AAAAAGGUGC GUGCCGCACU -CACGAGG-- 4321 ---------- ---------- -----GACUG -CCAGU---- GAGAU----A CUGG--AGGA 4381 AGG--UGGGG -----AUGA- ----C-GU-- C-A----AGU CCGCAU-GGC CCU------- 4441 ---------U AUGG-GCUGG -GCCAC---- ---------- ---------- -----ACACG 4501 UGCUA-CAAU --GGCAAUG- -ACAAU-GGG -----AA--- --GC----AA GGCU------ 4561 ---------- -GUAA----- ---------- ---GGC-GGA -----GC--- -----GAA-- 4621 ----U-CC-- GGAAA--GAU UGCC------ -------UCA GUU-CGGAU- -UGU--UC-- 4681 ---------- ---------- -UC-UG--CA ACUC--GG-- ---------- ---------- 4741 ------G-A- -ACA-U-G-- AAG-UAGAA- AUC-GCU-AG UA-AU-CGCG G-AUCAG--- 4801 ---CAUG--C C-GCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AUGUACC-C GG--GCCC-U GUACACACC- 4921 GCCC-GUC-A CACC-CUGGG A---AUU-GG -U-UUC-GCC -------CGA A----GCAU- 4981 CGGACCAA-- --UGA----U --CACC---- -CAUGA---C UUCUGUGUAC ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------CAC 5101 UA-------- ---------- ---------- ---------- ---------- ---------- 5161 -------GUG CCACAAAGGC CUUU---GGU G-GUC-UUA- ----UUGG-C GC-AUAC--- 5221 CAC------G GUGGGGUCUU C--------G ACUGGGGUG- AAG-UCGUA- AC-AAGG--- 5281 -U-AGC--CG U--AGGGGAA CCU-G-UGGC UGGAUUGAAU CC........ .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Acyb.aeg_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Agrocybe aegerita str. SM47 (gill mushroom; basidiomycete fungus) -- mitochondrion. REFERENCE 1 AUTHORS Gonzalez,P., Barroso,G. and Labarere,J. TITLE DNA sequence and secondary structure of the mitochondrial small subunit ribosomal RNA coding region including a group-IC2 intron from the cultivated basidiomycete Agrocybe aegerita JOURNAL Gene 184, 55-63 (1997) COMMENT Corresponding GenBank entry: U54637 (bases 650 to 2046) Corresponding GenBank entry: U54637 (bases 3427 to 3926) common_name= gill mushroom; basidiomycete fungus isolate_name= SM47 NB: GB Features table incorrect according to diagram in paper should be (join(650..2046,3418..3926)) 1446-1474n in diagram do not match GB entry BASE COUNT 674 a 253 c 336 g 643 u 3536 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ...UGGAAGA AUUUAA-UUU UGGUUCUGAU -UGAACGUU- UUUCA-GUA- GU-------- 181 ---------- ---------- ---------- ---------- UUUAA-GACA UGC-AA-AUC 241 G-UUA-UU-- ----UU--A- --G------- ---------A AAAAAG---- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ----UAU--A G-AA--UAA- -GGU--GUAA AGGUG--AGU AAU--GAUAA -AUAAGA--- 481 -UAC--CUUA U--CAG-U-C U----UU--- UC-----GAA AUA----GA- ---------G 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ------AUAC UUAUAUAAUA 781 U-AA-AUUA- ---UAUGC-- ---UAAU--- -AUAGCUAAA UUAUGA---A GA--A---AG 841 GAA---U--- UUUUCUA-CU -AUAAG---- -AG---UCGA U-UUA-UUUU GUUU-AAU-- 901 --U------- ---------- ---------- ---GGUAG-U UGGUAGG--- ---------- 961 GUAAAGG--- ---------- CC--UAC-CA -A-GCC-UAC GA--UCAAUA --GCCAA--G 1021 UUU-GAAA-G AACAAAUGGC -CAC-AUU-G GGAAUGAAAA G---CCCCAA AUUGC-UUAA 1081 --GCAA---- -----UCU-G CAGUCAAGAA UAU-U-AGUC AA-UGCUC-- -----GCAAG 1141 A--------- ---GUG-A-- ---ACUA-G- C-UA-ACU-G AA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AU-C 1261 AC-AAA---- ----AUCAC- -------UUA AUC------- -GUGGU---- --UAUU-GUG 1321 -AU-AACGUA AG---G---- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- --------GA AAA------- ---AAAUGA- 1501 ---------- ---UAUUA-- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------C--- --CUUAC--- 1681 -UAUAAGUGU U--GUCUAAA UUA-CUGGUG -CCAGAAGAC UC-GGUAA-C ACCA-GA--- 1741 -AAC-GCG-- AACGUUAGUC -GUCUUAA-A CAGGC-GUAA AG-GGUAAGU A-GGCU---- 1801 ---------- ---------- ------GCU- -----UUAAA U------UUU CUAUUUUU-- 1861 ---------- ---------- ---------- ---------- ---------- ------AAAC 1921 UAAAUUUACU UUUAAGUAAA UAAGCUCUAA AUUUAAUAAA UAAAAAUAAA AUUUUCAACU 1981 CGCAAUCCUC AGGAUUUUUA UGAGAAAAUU AAAUAAAUUU GACCUGUAAU UUUAUUAAGA 2041 UCAGU----- ---------- ---------- ---------- ---------- ------AAAA 2101 AUA-GAAU-A AA------UU AA------AG CUAG--AAU- CAUAAUGGA- G-AUAAACC- 2161 -----AAAU- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AAUA--CUUA UGUGU-AAG- -GAUGAU--- 2281 AUC-UAAAGA U-ACUA-A-G U-A-GA-AU- ACUA------ ---------- ---------- 2341 ---------- ------AUGG U-GAAA--AC U-UUUUAUC- -UAGUAAUG- --------AU 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CUC--GAG-- -GAA---C-- GAAAGUG-GA 2641 A-UAGGGAA- UAGGAUUAGA UAC--CCACG -UUACCU-CU CACCGUCAAC GAU--GAA-- 2701 ---UG-GU-- -AGU--UAUU A-GU----UU ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------AA UAU------- ---------- ---------- 2941 ---------- ---------- ---------- ----AA---- --AUUAGUA- -AC-GAUGU- 3001 ------UAAC ---------- -GCGAU-AAC CAUUCCG-CC UUG-AGAGU- --AC---GGU 3061 U--GCAA-AA CU-GAA-ACC AAAAAAAU-U AGU------C GGUC-UCGGA ---GC-AAA- 3121 -CGAAGUG-A AGCAUGUUAU UUAAU-ACG- AAA-GUACG- --CGUA---- ------AAAU 3181 CUUA--CCAG UUCUUGCAUA UCCAAUCCCU C------UUU UUAGGAUGU- AAUAGUUAUU 3241 ACU-UACUGU UUUUUUUUUU AUUAUUAUUA UA-AUAAUAA UCCAGGGGCA AAUAUUA-UU 3301 AAAUAUUAAA AAGACUGGAU UGAG-UAAU- -UUCUAUUUA AAUUUUUU-- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- -AAUUUUUAA AUUUAUU-AG AA-AUUCGUU UACAGGU-GU 3601 UGCA-UG-GC -U----GUCG -UCA------ GUCC--GU-A UU--GUGA-- -AAAGU---- 3661 ---------- ---------- ---GAGG--- --------UU AACU------ -----CCA-C 3721 -------UA- -AC-GGAC-G AAAU-CCCUG ---------- -----UUGUU AA-------- 3781 ---------- ---UUUAUAC ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- -UUAACUA-- 4321 ---------- ---------- --------UU -GAUGAU-UA UUAAAU--AU UUUC------ 4381 AUU--UGGGG ------CUA- ----A-GA-- C-A----AGU CGUUAU-GGC CCU------- 4441 ---------C AUGA-ACUGG -GCUAU---- ---------- ---------- -----AGACG 4501 UGCUG-CA-- --AAAACUUU UACAAU-GUG ACGCAAAACU UAGC--UUCU GCU------- 4561 ---AAUUGUU AGUUAGAGCU AAAA------ ----GG-UUU A----GCUAA UCAAUAAAAA 4621 AAGUU-AU-- UUUUA-UUAU UUUU------ -------AUA A-A-CGGAU- -UGU--UG-- 4681 ---------- ---------- -CC-UG--GA AUUC--GG-- ---------- ---------- 4741 ------C-A- -ACA-U-G-- AAG-AAGGC- CUU-UCG-AG UA-AU-CGUU G-AUUAG--- 4801 --UAUUG--C A-ACGGU-GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --AUUGAA-U CC--GUGA-U GAACUAACU- 4921 GUCU-GUC-G CUGG-GGAGG A---GUU-CC -G-AUU-GGG CCAAAUCCCC U--------- 4981 ----UUAA-- --UA------ --AAU----- -AUGAAG--A ACAAAAG--- ---------- 5041 UAUACACUAU AUUAAAUUUA UAUUAAAAAU AUUUGUUAAA UAUUUUUCUA AUUAUUUUUA 5101 AUUAAGUGUA GUUAUUCUUA UUUGUUACUU AUGUAACUUU AUAUAGUGCA GUUUAACU-- 5161 ---------- CUUUUGUU-G AG------AU U------UA- ----UUAA-- ---------U 5221 AUCGAUUAAC CC-UUCUGAG U--------A ACAUUUCAA- AAG-UCAUA- GC-AAGG--- 5281 -U-AGCUU-G U--ACUGGAA AGUCG-CUGC UGGAAAAUAU AUAUUGAUCC C......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Pyla.lit_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Pylaiella littoralis (brown alga) -- mitochondrion. REFERENCE 1 AUTHORS Markowicz,Y., Loiseaux-de Goer,S. and Mache,R. TITLE Presence of a 16S rRNA pseudogene in the bi-molecular plastid genome of the primitive brown alga Pylaiella littoralis. Evolutionary implications JOURNAL Curr. Genet. 14, 599-608 (1988) COMMENT Corresponding GenBank entry: X14874|g468502 (bases 141 to 1654) common_name= brown alga BASE COUNT 455 a 258 c 398 g 403 u 3928 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... ........UA 121 AUAAAAAUGA GUUUGA-UCC UGGCUCAGAG -UGAAGGCU- AUAAG-UCU- G--------- 181 ---------- ---------- ---------- ---------- CUUGAAUACA UGC-GA-GUC 241 GAAUG-AU-- ---------- ---------- ---------- -UUAG----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- --AU--CAU- -GGC--GUAC GGGUG--AGU AAU--AGACU -CAUAUC--- 481 -UGG--CCCC A---AC-U-C UUG-GAUAA- -----UCCUA UCCC------ U-----CCGG 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------AGA AAAAAAGGGA AAUACAGGAU AAUUAUAA-- 721 ---------- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---GG----- ---------U 841 ACG------- ----CCG-GU -UGGGG---- -AU---GAUU A-GGU-CG-- -AGU-AUU-- 901 --A------- ---------- ---------- ---GGUAG-U UGGUAAG--- ---------- 961 -UAAG----- ---------- CU--UAC-CA -A-GCC-UUU GA--UGCUUA --GUUG---G 1021 UCU-GGGA-G GACGAUCAAU -CAC-ACU-G GGACUGAGAC AAG-GCCCAG GUUUC-AUUU 1081 --GAAG---- -----GCA-G CAGUA-AGGA AUA-UUGCAC AA-UGAGC-- ------GAAA 1141 ---------- ---GCUUG-- --AUGCA-G- C-AA-GAC-U UG-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-G 1261 AG-G---GAU UGA-AGGC-- ---------U UA-------- --GGUU--GU AAA--C-CUC 1321 -UUUUU-UAA CUGAGG---- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ----AUAAUG 1501 A--------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------CAUU A-AGUUA-AG 1681 -AAUAAGUCC C--GACUAA- C---UUCGUG -CCAGCAGUC GC-GGUAA-U ACGG-AG--- 1741 -GGG-GCA-- AGCCUUAUUC -GUCAUAA-C UGGGC-GUAA AG-GGCCCGU A-GGUU---- 1801 ---------- ---------- ------GCU- -----UUC-- UGU----AAA -GUU------ 1861 AUUU------ -------GUU AA-------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -----AUAUU 1981 AUAGC----- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -------UUA AC-------U AUAAAAA--- 2101 GGC-AUUUAA A-ACA---UG AA------AG CUUG--AGU- CUG-ACAGA- G-GGAAAU-- 2161 -----GGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUUU--UUAA --UUA-GGG- -UUAAAC--- 2281 UCC-GGAUAA --GUAA-A-A G-A-GA-AC- AUCA------ ---------- ---------- 2341 ---------- ------GCUG C-GAAA--G- --AUUUCCU- -UGUUCA-GU --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CU---GAG-- -GGG---C-- GAAGGCGUAG 2641 G-UAGCGAA- CAGGAUUUGA GAC--CC-UG -GUAGUC-UA CGCUGUAAAC GAU--GAG-- 2701 ---UG-CU-- -AAU--UUUU --AG------ ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------A AAU------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- --CUAGAAA- -AU-AUAGC- 3001 ---------C AAG------- -GCAUU-AAG CAU--CG-CU GAG-GAGU-- --AC---GAG 3061 C--GCAA-GC UU-AAA-AAU CAACGGAA-U UGG------C GGGG-GUUCA ---AA-CA-- 3121 -AGUGGUG-G AGCAUGUGGU UUAAU-GCG- AUA-AUACG- --CGCG---- ------UAAC 3181 CUUA--CCAG UUCUA----- ---------- -------GU- AA-GUCU--G UC-------- 3241 ---AUUUUUA C--------- --------GA GAC------- ---------- GUAACAA--- 3301 ---------- --A------- -----CUUUG ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- --GGACU-U- U--C------ ---AGGU-GU 3601 UGCA-UG-GC -U----GUCG -UCA------ GCUC--GU-G UC--GUGA-- -GAUGU---- 3661 ---------- ---------- ---AGGG--- --------UU AAUU------ -----CCU-G 3721 -------UA- -ACUGAGC-G CAAC-CCUCG ---------- -----UCUCU UU-UAAG-U- 3781 -UUUGU-AAU AGUUUAUACU AAGUA-AUAA AA-------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----C-A-- -GGAGAGA-- 4321 ---------- ---------- -----UACUG -CCAAC---- -GUUG----A GUGG--AGGA 4381 -AG--GUGGG -----AUGA- ----G-GU-- C-A----AGU CUUCAU-GGC CCU------- 4441 ---------U AU-A-ACUGG -GCUAC---- ---------- ---------- -----ACACG 4501 UGCUA-CAAU --GGGAAGG- -ACAAC-GAG -----UU--- --GC----GA G-GGA----- 4561 ---------- -GUAA----- ---------- ---UCC-AAA -----GC--- -----CAAU- 4621 ----C-UU-- AAAACC-UUU UCUU------ ---------A GUU-CGGAU- -UGG--GG-- 4681 ---------- ---------- -GC-UG--CA AUUC--GC-- ---------- ---------- 4741 ------C-C- -CCA-U-G-- AAG-UUGGA- AUC-ACU-AG UA-AU-CGCG A-AUCAG--- 4801 ---GAUG--U C-GCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -ACGUCAC-U GG--GCCU-U GCACACACC- 4921 GCCC-GUC-A CGUC-CUGGG A---GUU-GA -C-UUG-GCC ------AGAA GAUUU----- 4981 ----AGG--- ------AAUA AACUUUUU-- ---AA----G UU-GAAG--- ---------- 5041 ---------- ---------- ---------- ---------- -------UUU -GAUAAAAAA 5101 AAGCUUUUUU UCU------- ---------- ---------- ---------- ---------- 5161 ---------- UUUCUAAC-G A----AAAAA GAAAGU---- -----CCU-- ---------U 5221 UUGAA----G GACAGGUAAG C--------A ACUGGGAGU- AAG-UCGUA- AC-AAGG--- 5281 -U-AGU--CG U--AGGGGAA CCU-G-CGGC UGGAAAAAUU .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Clmy.eug_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydomonas eugametos (unicellular green alga) -- mitochondrion. REFERENCE 1 AUTHORS Denovan-Wright,E.M. and Lee,R.W. TITLE Comparative structure and genomic organization of the discontinuous mitochondrial ribosomal RNA genes of Chlamydomonas eugametos and Chlamydomonas reinhardtii JOURNAL J. Mol. Biol. 241, 298-311 (1994) COMMENT Corresponding GenBank entry: L28930|g455443 (bases 246 to 356) Corresponding GenBank entry: L28929|g455445 (bases 1866 to 2123) Corresponding GenBank entry: L28929|g455445 (bases 2800 to 3162) Corresponding GenBank entry: L28931|g455444 (bases 1150 to 1658) common_name= unicellular green alga BASE COUNT 428 a 194 c 269 g 350 u 4201 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... ...AAAUGAA 121 AAAGUAAUGG GUUUGA-UAG UGGCUCUGCA -AGAACGCU- UUAUU-AUG- G--------- 181 ---------- ---------- ---------- --------GA AGUAA-UACA UGC-GA-GUG 241 --AU------ ---------- ---------- ---------- AUAGA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- -------GU- -AGC--GUAC GGGUG-AGUA GAUU-AUGCG -AGU-UU-AA 481 AUAUA-CCAA UA--GU-AAC UUA------- ------GUAU UA-------- -------UAA 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --A------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- --------AU UAUUGG---- ------GAAC U-CGC-AU-- -UGG-AUU-- 901 --A------- ---------- ---------- ---GAUAG-A UGGGAA---- ---UGAUGAA 961 UGUAUAUUAU AGC------- -U--UCC-CA -U-GUC--UA A---AACAUA --GUUU---A 1021 AUU-GAUA-G AUUAUUAAAU -CAC-AAU-G GCACUGAAAA AAG-GGCCAU ACAAU-AAAU 1081 --AUUG---- -----UCA-G CAGUA-GAGA AUA-UUGGAC AA-UGUA--- -----AAAAC 1141 A--------- ----UAUG-- --AUCCA-GA G-C--AUA-A UA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UU-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 -----AGUCC U--GGCAAA- U---UCUGUG -CCAGCAGCC GC-GGUAA-G ACAG-AU--- 1741 -AGG-ACA-- AGUGUAUUGC -AUAAUGA-U UGGGU-AU-U -G-CGUGUGA A-AGC----- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ------AUGA CU-------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ------UAU- AAA-GAA-A- A-AGAAUA-- 2161 -----GGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUCU--CCAU --GUA-UUG- -GUAAAA--- 2281 UAA-GCAAAU --AUGG-AUG A-G-GA-AC- GCCA------ ---------- ---------- 2341 ---------- ------AAGG C-AUAA--GC A-UAUUUUG- -AAAAUU-U- --------AU 2401 AU-------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----AA--G- CU---GUA-- -ACA---C-- GGAAGUCCGA 2641 G-UAGCAAA- AAGGAUUAGA GAC--CC-UC -GUAGUU-CG GACCGUCAAU U----GCC-- 2701 ---AU-U--- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ------UUAU AU-------- ---------A AUGGUCA-CC U----GAU-- -GACAC-GGC 3061 G--GCAA-CG CUAUUAA-GU CAAAGUAU-U AGA------C GGAG-AUCAA ---UA-AA-- 3121 -UGCGGUG-G AGCAUGUGGU UUAAU-GCG- ACG-AUCCC- --CGCA---- ------AAAC 3181 CUUA--CCAC UUU------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- -------UUA ACAUUUUAA. 3421 ...AA----- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---GGGC-AU 3601 UGCA-UG-GC -UGAUCAACU GUUU------ UUGG------ ---------- ---------A 3661 UGUUGAUGAC UU-------- ---UGUCGCG UCGCAUGC-A AUU-GUAUGC GACGCGAC-A 3721 UUACACAUUA ----CUGA-- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ------AAA- ----A-GU-- U-ACACAAGU CCUCAU-GGU CCU------- 4441 ---------U AUAG-AGUGG -GCCAC---- ---------- ---------- -----ACAUU 4501 UGCUA-CAAU --GGAUG--- --CUC--GGU ---------- --CGU----- C-GC------ 4561 ---------- -CGCUC---- ---------- ---GC--CA- ----GCG--- ---------- 4621 ----AACC-U AAAAAU---C AUUC------ -------GAA GUC-CAGAU- -UAGA-UA-- 4681 ---------- ---------- -UC-UG--AA ACC---GG-- ---------- ---------- 4741 ------U-A- -CUA-U-U-- AAG-UAGGA- AUC-GCG-AG UA-AU-CGAA A-AUCAGA-- 4801 ---CAAG--U U-UCGGU-GA AGUUAA-AAG AUAUUGUAGA CAUUGACUAU UUCAGAUCCU 4861 GAAAUAGUCG UGGCAUACAU AUCUU-CAUU -AUUUUAG-U UG--AUCU-A GUACUCACU- 4921 GCCC-GUC-A AGUA-CUGAA A---GAA-AU -U-UUG-AUG UGA-----AA ---------- 4981 ----AUAC-- --AU------ ---------- --AAU----U AUC------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- -------AUA 5101 UA-------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ----GAUA-C ACA------- -------AU- ----GUAU-- ---------- 5221 AUA---UAAC UUUAACGUUU U--------A AUUGGUAUU- AAG-UCGUA- AC-AAGG--- 5281 -U-GAC--AC U--AGGGGAA CCU-G-GUGU CGAGAUAGAA AA........ .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Clmy.rei_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydomonas reinhardtii str. CW-15 (unicellular green alga) -- mitochondrion. REFERENCE 1 AUTHORS Boer,P.H. and Gray,M.W. TITLE Scrambled ribosomal RNA gene pieces in Chlamydomonas reinhardtii mitochondrial DNA JOURNAL Cell 55, 399-411 (1988) COMMENT Corresponding GenBank entry: M25119|g336696 (bases 1 to 115) Corresponding GenBank entry: M25120|g336697 (bases 1 to 217) Corresponding GenBank entry: M25121|g336698 (bases 1 to 410) Corresponding GenBank entry: M25122|g336699 (bases 1 to 458) common_name= unicellular green alga isolate_name= CW-15 BASE COUNT 343 a 252 c 310 g 295 u 4242 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ..AAAUUAGA GUUUGG-UGC UGGCUCAGCU -UUCAUGCGC CGAGC-GGU- G--------- 181 ---------- ---------- ---------- ---------- GUUUA-UACA UGC-GA-GCU 241 --U------- ---------- ---------- ---------- ---------- --------AA 301 AAGAUUAAGG CCACGAGUGC GUAAUACGCG AGUU-UAAAU UUAUUAUACA A--------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- --------A- -AGU--UGCU AGGUG--ACC CA---AUACG -GG------- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --CAUCGG-- 781 ---------- ---------- ---------- ----GCAAAA ---------- ---------- 841 ---------- ---------- ---------- ---------C U-CGC-GU-- -AGG-AUU-- 901 --A------- ---------- ---------- ---GCGAG-C UGGGUCG--- -------CGA 961 CGCCAAUACA G--------- CG--GCC-CA -U-GGC--UU A---UCCUUA --GCCU---G 1021 UCU-UAAC-G GUACU-AGGC -CAC-GGU-G GCACUGAAAA GG--GGCCAC GGUUC-UUAU 1081 --GAAC---- -----CCA-G CAGUG-UUGA AUU-UUGGAC AA-UCGCU-- -----UGAAC 1141 ---------- ---GGCGG-- --AUCCA-GA U-G--CUG-C UU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AC-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- AAA-AUUGUU UGU------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ----GAACAC C--CCCCAA- G---CACGUG -CCAGAAGGG UC-GGUAA-A ACGU-GC--- 1741 -GGU-GUC-- AGUAUAAAGC -GUCUUGA-C UAGGC-AGGC AG-CGCGUCU --GAGC---- 1801 ---------- ---------- ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ------GUUA AUGGUGAAC- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ACU-UUAAA- C-GUUGG--- 2161 -----GUAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UAUU--CGGA --GGA-UCG- -GUCAAA--- 2281 UGA-GAAUAU --UCCG-G-A U-G-GA-AA- GCCG------ ---------- ---------- 2341 ---------- ------AAGG C-GAAA--GC A--CCAACA- -UCAGAG-U- ---------- 2401 -CACUAAA-- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- -------GC- UU----CA-- -ACG---C-- GUAAGUUUGG 2641 G-UAGCGAA- CCGGAUUAGA GAC--CC-GC AGUAGUC-CA AACCGUCAAC ACA--UUA-- 2701 ---UA-G--- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 ------UUUU CAAAU----- ---------C UAUAACG-CC UGG-UGAU-- --AC---GGU 3061 G--GCAA-CA CU-AUA-AAU CAAAGCAA-U UGG------C AGCG-AUAGA ---GA-UG-- 3121 -CGCGGUG-G AAUAUGCUGU UUAAA-UCG- AAU-UUACG- --CGCA---- ------AAAU 3181 CUUA--CCAC UUU------- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- -------UUA UUA....AAA 3421 U--------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGCU-CU 3601 UGCA-UU-GC -U-------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- --GAAAAGUU CGAGCGGGAC CUCGCCCUUA 3841 GUGCCGGUCU UUGCCACGUU UUCUGAACGG UCGAGCA--- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- -------AGU CAUCAU-GGG GCU------- 4441 ---------U AUAG-AGUGG -GCUAC---- ---------- ---------- -----AGGCG 4501 UAUUA-CA-- --UUGGACA- ---------- ---------- ---------- ---------- 4561 ---CCCACAA GUUGGAUACC AAAAC----- ---------- ---------- ---------- 4621 ---------- -------UGU CCGA------ --------AU AUA-CGGAU- -UGG--AG-U 4681 AGCAAAACGA GAGAACUAUA CAG-----UU CGU---UUGC AUCGUUAUGC CUUGCUGAAA 4741 CUAGC-C-U- -CCA-U-G-- AAG-AAGGA- AUC-GCG-AG UA-AU-CGUA G-AUCAUU-- 4801 ---AGCG--C U-ACGGU-GA AG-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --GUAACC-U CU--AUUG-U GCACACAUU- 4921 GCCC-GUC-A CCUC-CGAUA A---UAG-UA -U-UGU-ACA ------GGAA GAA------- 4981 ----CUA--- ---------U --GGCU---- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ---ACACUUA 5101 AGUCGC---- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- -------GGC C--------- -----UAG-- --------GA 5221 ACGUA----U GCGUGAUAUU A--------G AGUUGGAGU- AAG-UCGUA- AC--AGG--- 5281 -U-UGG--GG U--AGGGGAA CCU-G-CUCC AGAGUCAAAU UUAUAUAA.. .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Clra.sp_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Chlorarachnion sp. CCMP 621 (amoeboflagellate) -- mitochondrion. REFERENCE 1 AUTHORS Gilson,R., Waller,R. and McFadden,G. TITLE Preliminary characterisation of Chlorarachniophyte mitochondrial DNA JOURNAL J. Eukaryot. Microbiol. 42, 696-701 (1995) COMMENT Corresponding GenBank entry: U36908|g1040983 (bases 572 to 1911) common_name= amoeboflagellate BASE COUNT 372 a 283 c 389 g 295 u 4103 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ..UAUACCGG GUUUGA-UCC UGGCUCAGAG -UGAACGCU- AGGGG-UAC- G--------- 181 ---------- ---------- ---------- ---------- CAUAA-CACA UGC-GA-GUC 241 -AACG----- ---------- ---------- ---------- --UAU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ------CGU- -GGC--GAAC GGGUG--AKU ACA--GCAGG -CAAUUA--- 481 -CGC--CCGG U---AG-C-C CAG-A----- ------AUAA AU-------- ------UCUG 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --A------- 781 ---------- ---UAAA--- ---------- ----AA---- ---GAU---- ---------U 841 A--------- ---AUCG-UU -GCCGG---- -AU---AUGU C-UGU-GU-- -AGG-AUU-- 901 --A------- ---------- ---------- ---GAUAA-U C--------- ---------- 961 GUAGA----- ---------- ---------G -A-GUC-GAU GA--UCCUUA --GUUGA--A 1021 UCU-GGGAAG GAUGCACAGC -CAC-AUU-G GAACUGAGAC AAG-GUCCAA GCUCC-AGUA 1081 --GGAG---- -----GCA-G CAGUG-AGGA AUA-UUGGGC AA-UGGGC-- ------GAAA 1141 ---------- ---GCCUG-- --ACCCA-A- C-GA-UAC-C CC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-G 1261 AU-U---GAA GAA-GACC-- -------AA- ---------- --GGUC--GU AAA--G-GUA 1321 -CGCGG-UCA GUAAAG---- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ----AUUACG 1501 A--------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------CGGU A-ACUGG-CC 1681 -AAAAAGCCC C--GGCUAA- C---UCCGUG -CCAGCAGCC GC-GGUAA-U ACGG-GG--- 1741 -GGG-GCA-- AGUGUUAUUC -GCAAUGA-C UGGGC-GUAA AG-CGUGCGU A-GGCG---- 1801 ---------- ---------- ------GCU- -----UGC-A AUU----AGC CCUUUUGCGA 1861 AAGC------ -------UAG GG-------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------CUC 1981 AA-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -------CCU UA-------- --GU-G--UG 2101 A-----CU-U UUGGCACA-G CA------AG CUAG--AGU- UUG-GUAGG- G-GUUGGU-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUCU--CAGA --AGA-GGG- -GUACAA--- 2281 UCC-AGGGAC --ACUG-A-G A-C-GA-AU- ACCU------ ---------- ---------- 2341 ---------- ------AGGG C-GAAG--GC A-GCCAACU- -GGACCAU-- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CU---AAA-- -GCA---C-- GGAAGCGUAG 2641 G-UAGCAAA- UAGGAUUAGA UAC--CC-UA -GUAGUC-UA CGCCGUCAAC GAU--GGG-- 2701 ---UA-UU-- -GGC--AAU- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------U AA-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ------AUU- -GC-UAAGC- 3001 ------UAAC ---------- -GCGUU-AAA UACCCCG-CC UGG-GGAGU- --AC---GGU 3061 C--GCAA-GA UU-AAA-ACU UAAAGGAA-U UGA------C GGGA-GCUUG ---CG-CA-- 3121 -AGCGGUG-G GGCAUGCGGU UUAAU-CCG- AUA-UUACA- --CGUA---- ------AAAU 3181 CUUA--CCAA CCCUUGAACA AAC------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGGU-GU 3601 UGCA-UG-GC -U----GUCG -UCA------ GCCC--GU-G UC--GUAA-- -GAUGU---- 3661 ---------- ---------- ---UUGG--- --------UU AACU------ -----CCU-U 3721 -------UA- -AC-GGGC-G UAAC-CCCUC ---------- -----UC--- ---------- 3781 ---------- ----UUCG-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ------GA-- 4321 ---------- ---------- -----GCAC- -CG------- -CUGU----- --UG-AAAUA 4381 ACA--GGGGG AGGUAGGGA- -UCAC-GC-- C-A----AGU CGUCAU-GGC CCU------- 4441 ---------G AUGG-GUUGG -GCUAC---- ---------- ---------- -----ACAUG 4501 UGUCA-CAUA --GUUGCAU- -ACAGC-GAG -----AG--- --GC----AA AGAC------ 4561 ---------- -AAAA----- ---------- ---GUC-GGA -----GC--- -----AAU-- 4621 ----C-UA-- -UAAC--GUG CAAC------ -------CCA GUU-CGGAU- -UAU--CU-- 4681 ---------- ---------- -CC-UG--CA ACUC--GG-- ---------- ---------- 4741 ------A-G- -AUA-U-G-- AAG-GCGUA- AUC-GCU-AG UA-AU-CGCG U-AUCAU--- 4801 ---AAUG--G C-GCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -ACGUGAU-C AA--GCUU-U GUACACACC- 4921 GGCC-GUC-A CGAC-CGGAA A---GUC-AG -C-UUU-GCU ---------U ---------- 4981 ----GAAU-- --GG---UUC G-CAGU---- ---GAU---C GCUU------ ---------- 5041 ---------- ---------- ---------- ---------- ---------- ------GCUU 5101 CGUG------ ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---AAGCG-U A------ACU G------UC- ------UC-- ---------U 5221 UGAU-----A GUAGGGUCGA U--------G AUCGGGGCG- AAG-UCGUA- AC-AGGG--- 5281 -U-AGC--UG U--AGGGGAA CCU-G-UAGC UGGAGAAAA. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Prth.wi2_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Prototheca wickerhamii SAG 263-11 (colorless unicellular alga) -- mitochondrion. REFERENCE 1 AUTHORS Wolff,G. and Kueck,U. TITLE The structural analysis of the mitochondrial SSUrRNA implies a close phylogenetic relationship between mitochondria from plants and from the heterotrophic alga Prototheca wickerhamii JOURNAL Curr. Genet. 17, 347-351 (1990) COMMENT Corresponding GenBank entry: X15435|g13446 (bases 70 to 1749) common_name= colorless unicellular alga BASE COUNT 542 a 267 c 379 g 492 u 3762 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .........A 121 AUUAUAUUGA GUUUGA-UCC UGGCUCAGAA -UGAACGCU- AGCCG-UAG- G--------- 181 ---------- ---------- ---------- ---------- CUUAA-CACA UGC-AA-GUU 241 GUACG-UU-- ----UUU-U- -AU------- ---------- -AAAU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ----AUA-GA A-AA--AGU- -AGC--GAAC GGGUG--AGU AAC--GCGUG -AGAAUC--- 481 -UGC--CUCU U---AA-A-C UGC-GGAAUA AC-----AUU AC-----GUU AGAAU-CGUG 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------AUA AGUA------ ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------UU 781 UUAUGUUAUA ---UUUA--- --UAUAAAAU AAAGUAUAAA ---GAA---U ---------- 841 AAU------- --AUUCG-UU -AAGAG---- -AU---GAGC U-UGC-GU-- -AAG-AUU-- 901 --A------- ---------- ---------- ---GGUAG-U UGGUAAG--- ---------- 961 GUAAAGG--- ---------- CU--UAC-CA -A-GCC-AAA GA--UCUUUA --GCUG---G 1021 UUU-GAGA-G AAUGAUCAGC -CAC-AUU-G GGACUGAGAC ACG-GCCCAA AUACU-UUAG 1081 --AGUA---- -----GCA-G CAGUG-GGGA AUA-UUGGAC AA-UGGGC-- ------GCAA 1141 ---------- ---GCCUG-- --AUCCA-G- C-UA-UAC-G GC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AU-G 1261 AG-U---GUA GAA-GACU-- --------GU AUU------- --GGUU--GU AAA--G-CUC 1321 -UUCGG-UGA UAUAUUUUUA ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ----GAUUAU UUAUAAUUUU 1501 AAAGAGCAGA G--------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- AUUAUGACAA CGUAUCA-UC 1681 -AAAAAGUCC C--GGCUAA- U---CUCGUG -CCAGCAGCC GC-GGUAA-U ACGA-GA--- 1741 -GGG-GCG-- AGCGUUAUUC -GGAAUGA-U UGGGC-GUAA AG-CGUGCGU A-GAUU---- 1801 ---------- ---------- ------GUU- -----AGAA- -UG----GA- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ------UUUC UAUAUAAAAA UCAAGGCAAC ACCUUGAUAG AUAGAAAAGC AUUAGUUUUA 1981 UAAAAAUUAA UAAUUAAUAG AUGUAAUUUA UAAUAAUAAG UUAUAUUUAU GUUU------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ------UC-- --CA----UC CA------AA CUUG--AGU- AUU-UAUUA- G-GAGAGU-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUCC--UGGA --GUA-GAG- -GUAAAA--- 2281 UUU-GUUGAU --CUCA-G-G A-G-GA-AU- ACCU------ ---------- ---------- 2341 ---------- ------AAAG C-GAAA--GC --AGCUCUC- -UAGUAAAAC --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CA- UU---GAG-- -GCA---C-- GAAAGCGUGG 2641 G-UAGCGAA- AAGGAUUAGA UAC--CC-UU -GUAGUC-CA CGCCGUCAAC UAU--GAU-- 2701 ---CU-UU-- -UUC--UAUU UUCC----CU U--------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------GC AAG------- ---------- ---------- 2941 ---------- ---------- ---------- ---GGG---- --GGAAGUG- -GA-GUAGC- 3001 ------UAAC ---------- -GCGUU-AAA AGAUCCG-CC UGA-GGAGU- --AC---GGU 3061 C--GCAA-GA UU-AAA-ACU CAAAGGAA-U AGA------C GGGG-ACCCG ---CA-CA-- 3121 -AGUGGUG-G AAUAUGCGGU UUAAU-UCG- AAA-CAACG- --CGCA---- ------AAAC 3181 CUUA--CCAG UCCUUGAU-- ---------- -------AUG -A-CAC---- UU-------- 3241 ----AUAGU- ---U------ --------AA AAU------- ---------- --GUUAU--- 3301 -------CGU ---------- -----UUUAU ---------- -----ACU-- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---UUGU-GU UA-C------ ---AGGU-GU 3601 UGCA-UG-GC -U----GUCG -UCG------ GUUC--GU-G CC--GUAA-- -GGCGU---- 3661 ---------- ---------- ---UGGA--- --------UU AAUU------ -----UCU-U 3721 -------UA- -AC-GAAC-G AAAC-CCCUG ---------- -----UUAUC AA-UUGC-UA 3781 AGAUUACUAA AAAC-AAU-G UUUUUAG-AU CA-------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----GAACU -UUGAUAU-- 4321 ---------- ---------- -----UACUG -CCAGU---- GAUAA----A CUGG--AGGA 4381 AGG--AAGGG -----AUUA- ----C-GU-- C-A----AGU CUUCAU-GAC CCU------- 4441 ---------C AUGG-GCUGG -GCUAC---- ---------- ---------- -----ACGUG 4501 UAUUA-CAAU --GGCGAAU- -ACAAA-AAG -----AU--- --GC----AA UGAU------ 4561 ---------- -GAGA----- ---------- ---AUC-GGA -----GC--- -----AAAU- 4621 ----C-U--- AUAAA--AUU CGUC------ -------UCA GUA-CAGAU- -UGU--UU-- 4681 ---------- ---------- -UC-UG--CA AUUC--GA-- ---------- ---------- 4741 ------A-A- -ACA-U-C-- AAG-AAGGA- AUC-ACU-AG UA-AU-CGUG G-AUCAG--- 4801 ---CACG--C C-ACGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -CAGUACU-C GG--GUCU-U GUACUCCCC- 4921 GCCC-GUC-A CACU-CUGGG A---AUC-GA -G-UAG-AUU -------GUA A--------- 4981 ----GUCU-- --GU-----A --UUUC---- ACUUUU---U UUCUA----- ---------- 5041 ---------- ---------- ---------- --------UU CUUUAGAAAU -AAUAAUAAG 5101 UUCUGAUGAA UUUAUUAAAU A--------- ---------- ---------- ---------- 5161 ---------- --UAGAAAUU UA-----GAA A------AU- ----AUAC-- ---------C 5221 CAG------A AUUUAUUUGG U--------A ACUGGAGUG- AAG-UCGUA- AC-AAGG--- 5281 -U-AAC--CG U--AGGGGAA CCU-G-CGGU UGGAUUACUU CUUUUUUUAC .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Tryp.bru_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Trypanosoma brucei (African trypanosome) -- kinetoplast. REFERENCE 1 AUTHORS Sloof,P., Van den Burg,J., Voogd,A., Benne,R., Agostinelli,M., Borst,P., Gutell,R. and Noller,H.F. TITLE Further characterization of the extremely small mitochondrial ribosomal RNAs from trypanosomes: a detailed comparison of the 9S and 12S RNAs from Crithidia fasciculata and Trypanosoma brucei brucei with rRNAs from other organisms JOURNAL Nucleic Acids Res. 13, 4171-4190 (1985) COMMENT Corresponding GenBank entry: X02547|g13740 (bases 1189 to 1799) common_name= African trypanosome NB: 9S is the small; 12S rRNA is the large subunit BASE COUNT 249 a 35 c 68 g 259 u 4831 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 ......UAAA UUAUGGUCAA UUGUUAGUAU -UCAUAUU-- -AAUU-UUU- U--------- 181 ---------- ---------- ---------- ---------- UAAAU-GUUU UAU------- 241 ---------- ---------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ------CAUU UUAUA--AAG GUU--UAUUU -UUG-AA--- 481 ---------- ---------- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --------AG 781 AU-------- ---UUUUU-- ---------- GUAU------ ---------- ---------- 841 ---------- ---------- --------AA AAU---UUUA G-GAA-UA-G UUAA-UAA-- 901 --U------- ---------- ---------- ---AAUUU-A U--------- ---------- 961 --AAU----- ---------- ---------U -UUGAU--UA G---AUUGUU UUGU------ 1021 ----UAAU-- --------GC -UAU-U---- ---------- ---------- AGAUG-GGUG 1081 --UGGA---- -----AAA-A UAAAA-AAAA UAA-UUAAU- ---------- ------AUAU 1141 ---------- ---------- ---AUCA-AU A-AU--AA-A UU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- -------A-A 1261 AU-------- ---------- -------UAA UCU------- ---------- -------AUU 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 --------AG U---CAGAA- A---UGGAUG -CCAGCCGUU GC-GGUAA-U UUCU-AU--- 1741 -GCU---UUU AAAUAUUAUA ---CAAU--- -UAUC-AU-- -A-UUAAAUU G-UUAA---- 1801 ---------- ---------- ------GUGC UGA--UUUA- -------ACC AAUAA----- 1861 ---------- -------AAA U--------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ------AUAA 1981 AUA------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- --------AU UU-------- ---------U 2101 UAU-UUGU-U UU------UA AA------CA CCAUU-AGG- UAU-AU-GC- --A--AAU-- 2161 -----AUAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- AAUU--AUA- --GUA-AUU- --AUA----- 2281 AAU------- ---UAU-A-U U-A-UA-UU- AUA------- ---------- ---------- 2341 ---------- ------UUUA U-UCAU--AU A-AUUAAUA- -GGAUA--A- --------UA 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----UU-GU- AG----UU-- -UUU---G-- AUACCAUGAU 2641 A--AGGAUU- AUA-AAUUGA AAG---U-GU -UAAU-A-UC AU-AAUCAAA AUU------- 2701 ---------- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------- ---------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- ---------- 3001 --------UA UUAU------ ---------- -----UU-AU A--------- ---------- 3061 ---UUAA--- ---------- --AUAUGU-- AUG------U GU-------- ---------- 3121 ---------- ---------- ---------- ---------- ---------- ---------- 3181 ---------- ---AGAUAAA AUAAGAAAUU AAAA------ ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---------- 3601 ---------- ---------- ---------- ---------- ---------- ---------- 3661 ---------- ---------- ---------- ---------- ---------- ---------- 3721 ---------- ---------- ---------- ---------- ---------- ---------- 3781 ---------- ---------- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ---------- ---------- ---------- ---------- ---------- ---------- 4441 ---------- ---------- ---------- ---------- ---------- ---------- 4501 ---------- ---------- ---------- ---------- ---------- ---------- 4561 ---------- ---------- ---------- ---------- ---------- ---------- 4621 ---------- ---------- ---------- ---------- ---------- ---------- 4681 ---------- ---------- ---------- ---------- ---------- ---------- 4741 ---------- ---------- ---------- ---------- ---------- ---------- 4801 ---------- ---------- ---------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- ---------- ---------A GGUAUUGUU- 4921 GCCC-ACC-A AUUU-UUA-- ---------- ---------- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------UA 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- ---------- ---------- --UAAAAAU- AAC-GUGCA- GU--AAU--- 5281 -U-AAU--AU A--UUUAUAA AAA-U-AUAU U......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Dict.dis_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Dictyostelium discoideum str. AX3 (cellular slime mold) -- mitochondrion. REFERENCE 1 AUTHORS Angata,K., Kuroe,K., Yanagisawa,K. and Tanaka,Y. TITLE Codon usage, genetic code and phylogeny of Dictyostelium discoideum mitochondrial DNA as deduced from a 7.3-kb region JOURNAL Curr. Genet. 27, 249-256 (1995) COMMENT Corresponding GenBank entry: D16466 (bases 8602 to 10152) common_name= cellular slime mold isolate_name= AX3 BASE COUNT 573 a 218 c 366 g 394 u 3891 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......AAG 121 AAAAAAAUGA GUUUGA-UUC UGGCUCCGAA -UGAAUGCU- AUCAG-UGG- G--------- 181 ---------- ---------- ---------- ---------- CUUUA-UACA UGC-AA-GUU 241 GAACG-CU-- ----AUU--- ---------- ---------- -GAAA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 --------AA U-AG--AGU- -AGC--AAAA AGGUG--AGU AAU--GCAUA -UGAAUU--- 481 -UUA--AUAA U---AA-U-U UUG-GGAAU- ------AAAA GAA------- GAAAU-CCAG 541 A--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AUAAAA-- 781 ---------- ---------- ---------- ----AGAAA- ---GAGGAA- CU--UG--AA 841 AAA--CAGUA AGACUCG-UU -AUUAU---- -AA---AAGC G-UAU-GU-- -CGA-AUU-- 901 --A------- ---------- ---------- ---GGCAG-U UGGUGGG--- ---------- 961 GUAAAGG--- ---------- CU--UAC-CA -A-ACC-UGA GA--UUCGUA --GGUG---G 1021 UUC-GAGA-G AAUGAUCAUC -CAC-AUU-G GUAUUGAAAG AAC-GACCAA ACUCU-GAAG 1081 --AGGC---- -------U-G CAGUA-AGGA AUA-UUGGAC AA-UGAGC-- ------GCAA 1141 ---------- ---GCUUG-- --AUCCA-G- C-UA-CAC-U GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-G 1261 AG-G---GAA GAA-GU---- ---------A AA-------- ----GC--GU AAA--C-CUC 1321 -UUUUAAUAA GG-------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------A AGAUAAUGAC 1501 AAAAA----- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ----UUAAAG 1681 -AAGAAGUCC C--GGCUAA- U---UUCGUG -CCAGCCGCC GC-GGUAA-U ACGG-AG--- 1741 -GGG-GCA-- AGCAUUAUUC -GUAAGGA-U UGGGC-GUAA AG-GGUGCGU A-GGCU---- 1801 ---------- ---------- ------GGU- -----UCUCA AAGG---UAU UAUAUG--A- 1861 AAAA------ -------CAC UGA------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------AAA 1981 AA-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ------GAGG UG-------- -UGG-G--UA 2101 UAA-AAAC-A A-AC---AAA GA------AC CUAG--AGU- AAA-GAUGA- U-GUAUUU-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- GAAC--UAAU --CUA-GAG- -GUAAAA--- 2281 UUCAAUUUAG --AUUA-G-U U-U-GA-CU- GACAG----- ---------- ---------- 2341 ---------- ------UUGG C-GAAG--GC A-AAAUACA- -AG-CAA-U- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CU---AAA-- -GCA---C-- GAAGGUUCAG 2641 G-GAGCAAA- UCGGAUUAGA GAC--CC-GA -GUAGUC-UG AACAGUAAAC GAU--GAG-- 2701 ---UG-UU-- -CAA--UAUU ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------CU AAAA------ ---------- ---------- 2941 ---------- ---------- ---------- ---------- -----AGUA- -UU-UGAGU- 3001 ------UAAC ---------- -ACGUU-AAA CACUCCG-CC U----GAG-- UAGUAC-GAU 3061 C--GCAA-GA UUGAAA--CU CAAGGUAA-U UGA------C GGAA-CUUUG ---CG-CA-- 3121 -AGCAGUG-G AUUAUGUUCA UUAAU-UUG- AUA-CAACA- --CGAA---- ------AAAU 3181 CUUA--CCCU CCAUUGAA-- ---------- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- -------UGA CAUAUAUAAA 3421 ACAUGAAACA AAUGUGAAGA AUAGAAGCAG ACAAGGUUCU AUUAAAAUAA AUGUCUAAC- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AGGU-GU 3601 UGCA-UG-GC -U----GUCG -UCA------ GUUC--GU-G CU--GUGA-- -GGUGU---- 3661 ---------- ---------- ---AACA--- --------UU AAGU------ -----UGU-G 3721 -------AA- -AC-GAAC-G AAAU-CCUUA ---------- -----AGUUC AA-UUAC--- 3781 -GAU------ ---AUAUA-- --------AU C--------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----GAGAA -AUGGACA-- 4321 ---------- ---------- -----GAAGA -GUGUGACAU AAAUUAAAUC ACAU--UGGU 4381 AGU--UGAGG -----AAGA- ----U-GU-- C-A----AGU CAGUAU-GGC CCU------- 4441 ---------U AUAG-GAGGG -GCUUG---- ---------- ---------- -----AAAUG 4501 UAAUA-CAAU --GG-UUUC- UACAAA-AGG -----AA--- --GC----GA AAGU------ 4561 ---------- -GCAA----- ---------- ---GCU-GGA -----GC--- -----AAAA- 4621 ----C-CU-- AAAAA--GAA AUCU------ --------UA GUU-UGGAU- -UUA--UU-- 4681 ---------- ---------- -UC-UG--CA ACUC--GA-- ---------- ---------- 4741 ------A-A- -UAA-U-G-- AAA-GCGGA- AUU-GCU-AG UA-AU-CGUA G-AUCAU--- 4801 ---AAGG--C U-UCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --AGUUGU-C AA--AGUU-A GUACAUACC- 4921 GCCC-GUC-A CACC-ACGGA A---AUC-AA -U-CUU-UUU -------CA- ---------- 4981 ----GAUA-- C-AUUA-UUA UGUUAAUU-- ---------- ---------- ---------- 5041 ---------- ---------- --------AU CUAAAGUUCU UAGGGUAUAA -CAGUCUCUU 5101 UUGAAGAGCA AUUAGAAUGG AGGAGGUU-- ---------- ---------- ---------- 5161 ---------- ---------- -----AAUUG U----UAAU- ----UAUC-- ---------- 5221 GAA------C AAUAGAGGGG U--------A ACUGGGGUA- AAG-UCGUA- AC-ACGG--- 5281 -U-AGC--UG U--UGGGGAA CCA-G-UAGC UGGAAGUA.. .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Acnt.cas_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Acanthamoeba castellanii (amoeba) -- mitochondrion. REFERENCE 1 AUTHORS Lonergan,K.M. and Gray,M.W. TITLE The ribosomal RNA gene region in Acanthamoeba castellanii mitochondrial DNA. A case of evolutionary transfer of introns between mitochondria and plastids? JOURNAL J. Mol. Biol. 239, 476-499 (1994) COMMENT Corresponding GenBank entry: U03732|g495327 (bases 6184 to 7724) common_name= amoeba BASE COUNT 493 a 223 c 356 g 469 u 3901 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .UUGUAUAAA 121 CAAUCGUUGG GUUUUA-UUC UGGCUCCGAG -UGAACGCU- GGUAA-CAU- AU-------- 181 ---------- ---------- ---------- ---------- UUUAA-CACA UGC-AA-AUC 241 GAACG-AA-- ----AAG-U- -A-------- ---------- -AAUU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 -----UA-CU U-UA--AGU- -GGU--GACC UGGUG--AGU AGU--AUAGG -AGAAUU--- 481 -GAA--GUGU G---GG-U-- UAG-G----- ------CUAA AUU------- ------CCUA 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AAAUU-AU 781 U--------- ----AAA--- ---------- -AAU-AAAA- ---GAU---- ---------U 841 UAU------- ---AUCG-CC -UACAA---- -UA---GAGC U-UCU-AA-- -AGG-AUU-- 901 --A------- ---------- ---------- ---GGUAG-U UGUUGUA--- ---------- 961 GUAAUUA--- ---------- UU--CAA-CA -A-GCC-GAC GA--UGCUUA --GCUG---G 1021 UUU-GAGA-G AAUGAUCAGC -CAC-AUU-G GGACUGAAA- ACG-GCCCAA GUCUU-CUAA 1081 --AAGG---- -----GCA-G CAGUG-GAGA AUA-UUUGAC AA-UGGGC-- ------GAAA 1141 ---------- ---GCUUG-- --AUCGA-G- U-AA-UGU-U AC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-G 1261 GG-U-GAUCA GAA-GGCU-- --------UA AU-------- --UGCC--GU AAA--A-CUC 1321 GUUUCG-UCA AG-------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- --------GA UUAUAAUGCA 1501 AUCGUA---- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- --CUUGA-AG 1681 -GAGAAGCCC U--GACUAA- C---UUCGUG -CCAGCAGUC GC-GGUAA-U ACGG-AG--- 1741 -AGG-GCG-- AGUGUUAUUC -GCAUUGA-C UGGGU-GUAA AG-GGUGCGU A-GGUG---- 1801 ---------- ---------- ------GUU- -----UGUU- AAG----UUU CAAAGU--A- 1861 AAUG------ -------UUA AAC------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------AUA 1981 AA-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ------GUUU AA-------- --AG----GC 2101 UUU-UUAA-U A-CU----AA CA------GA CUAG--AGU- UUA-UUAGA- A-GAUAGC-- 2161 -----UGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CAUU--AAGU --GUA-AAG- -GUGAAA--- 2281 UUU-UUCGAU --AUUU-A-A A-G-GA-CA- UGCAA----- ---------- ---------- 2341 ---------- ------UAGG C-GAAG--GC U-GCUAUCU- -AUUUUAAU- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CA- CU---GAG-- -GCA---C-- AAAAGCAUAG 2641 G-GAUCAAA- CAGGAUUAGA GAC--CC-UG -GUAGUC-UA UGCCCUGACC GAU--GAA-- 2701 ---UA-UU-- -GAU--UAUA C-U------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------GC GA-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---GGUGUA- -AU-UAAGC- 3001 ------UAAC ---------- -GCGU--AAA UAUUCCA-CC UGA-GUACU- --AC---GAC 3061 C--GCAA-GG UU-AAA-ACU CAAAGAAA-C UGA------C GGAA-GAUUG ---UA-UA-- 3121 -AGCGGUG-G AGUAUGUGGU UUAAU-UUG- AUA-UAACG- --CAAA---- ------GAAU 3181 CUUA--CCAA CCCUUGA--- ---------- -------AUA CA-AGU---- -U-------- 3241 ----AUUUUA G-CU------ --------GU GAU------- --------A- AUGGAAU--- 3301 ---------- ---------- ---------- ---------- ---------- -------UUA 3361 U--------- UUUCAUUCUC ---------- AUAA------ -------G-C UCAUUA-UAA 3421 GGAUCACC-U GAGGAG-GUG U-AUC-AUAU UG-------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---ACUU-G- UA-C------ ---AGGU-GC 3601 UGCA-UG-GU -U----GUCG -GCA------ GUUC--GU-G UU--GUGA-- -AAUGU---- 3661 ---------- ---------- ---UUUG--- --------UU AAUU------ -----CAU-U 3721 -------UA- -AC-GGAC-G UAAC-CUUCA ---------- -----GCUUU AU-U--U-G- 3781 -UU------- ----UUU--- ---------G AA-------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----A--AA -AUAGAGC-- 4321 ---------- ---------- -----AAUAU -UAAUU---- -UGAA----A AUUA---AUU 4381 GAG--AGGAG -----AAGA- ----A-GU-- C-A----AAU CAUUAU-GGC CUA------- 4441 ---------U AUAG-GUUGG -GCUAC---- ---------- ---------- -----ACACG 4501 UACUA-CAAU --GGUAAUU- -ACAAU-GUG -----AA--- --GC----GA AAAU------ 4561 ---------- -GCGA----- ---------- ---GUU-UUA -----GC--- -----UAAU- 4621 ----C-AU-- UAAAA--AUU AAUC------ -------UUA GUU-CUGAU- -UAC--UC-- 4681 ---------- ---------- -UC-UG--UA AGUC--GA-- ---------- ---------- 4741 ------G-A- -GUA-U-G-- AAG-UAGGA- AUC-GCU-AG UA-AU-CGCA G-AAUAG--- 4801 ---AAUG--U U-GCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AUAUUCU-C AA--UCUU-U GUACACACC- 4921 GCCC-GUC-A CGCC-AUGGG A---AUU-GG -U-UUG-AUU -------AGA A----GUGG- 4981 UAUAGGCU-- --CAGAU--U C-UGAUG--- ----U----C UUUUAA---- ---------- 5041 ---------- ---------- ---------- ---------- ---------- ------UUUU 5101 UU-------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- -UU-AAAG-- U-----UAUC G--C-AUCUU ----GGUACU AA-UUAC--- 5221 GAC------A AUUAGAUUAA G--------G ACUGGGGUG- AAG-UCGUA- AC-AAGG--- 5281 -U-AGC--GG U--AGGGGAA CCU-G-CUGC UGGACAAAAU UUU....... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Phys.pce_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Physarum polycephalum str. M3C (acellular slime mold) -- mitochondrion. REFERENCE 1 AUTHORS Mahendran,R., Spottswood,M.S., Ghate,A., Ling,M., Jeng,K. and Miller,D.L. TITLE Editing of the mitochondrial small subunit rRNA in Physarum polycephalum JOURNAL EMBO J. 13, 232-240 (1994) COMMENT Corresponding GenBank entry: X75592|g414783 legacy_attribute= cDNA sequence legacy_attribute= clone pSSU common_name= acellular slime mold isolate_name= M3C BASE COUNT 558 a 324 c 418 g 561 u 3581 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... ..GUUUUAAU 121 AUAAUAAUGA GUUUGA-UCC UGGCUCCGAG -AGAAUGCU- AGCAA-CUU- A--------- 181 ---------- ---------- ---------- ---------- CUUGA-UACA UGC-UA-GUC 241 GAACG-CU-- ----U----- ---------- ---------- -AUAU----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- G-AG--CGU- -GGC--GUAC GAGCG--ACA AGG--GCAAA -GAU-----A 481 GAAAA-UACA UCAGUCA--A GG-------- -------GAA AU-------- --------CC 541 U--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --A-----GA 781 UUU------- ----AAA--- ---------A GAUUAUAUCG --C------- ---------- 841 ---------- -------UGA -AUGUA---- -AG-----GU C-UUU-GU-- -GAG-AUU-- 901 --A------- ---------- ---------- ---GGUUG-U UGGUAAG--- ---------- 961 AUAAAAG--- ---------- CC--UAC-CA -A-GCC-GAU GA--UCUCUA --GCUG---G 1021 UCU-GAGA-G GAUGUACAGC -CGC-GUC-G GAAAUGCAAU AAG-GUCCGG ACUCC-CUCG 1081 --GGAG---- -----GCU-G CAGUA-GGGA AUC-GUGAAC AA-UGUGC-- ------UAAC 1141 ---------- ---GCUUG-- --AUUCU-A- U-AA-UGU-U GC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-G 1261 GG-G---GAU ACA-AAAA-- -------ACA UUA------- --UUUU--AU ACU--U--AU 1321 ---------- ---------- UGUUUUAUAA ACAAAUUUAU AUAUAAAAUA GUGAUAAUUC 1381 UAGCAACGAC UUAAGCGCAA UAAAAGUUUC CGUAAAAAGA GAUUUUUAUC UGUGUCUUCU 1441 GUAGCGUGCC UUUCUAGUAG ACGGCAAGUU GUCUU----- ---------- ---------- 1501 ---------- ---------- -AAACCCCUU UUUUUACGAU UAUAAUGACU GUAGUUAGUA 1561 UAUAUCUAUU UAUCAAGAUG AGGGUUGGUA AAUUACAUUU UGUUUGUUAG ACUAAAAUAC 1621 UCGAGCAAAA AUGCCUUAUG CUGCUUUGCU UAAAAAUAUC ---------- ---------- 1681 ----AAACCC C--GGCUAA- C---UUCGUG -CCAGCAGCC GC-GGUAA-A ACGG-GG--- 1741 -GGG-GUU-- AGUGUUAUUC -GUGAUGA-C UGGGC-GUAA AG-GGUACGU A-GGCA---- 1801 ---------- ---------- ------GAU- -----AAU-- UGAA---AAU ACAGUA--A- 1861 AAAA------ -------CUG AGG------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------UAA 1981 AC-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ------CCUC UU-------- --CA----UU 2101 CUG-UAUU-C ACUC-----A UU------AU CUUG--AGU- UCA-GAAGG- C-GGUUUAU- 2161 -----UGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUCU--CGAA --GGA-AGG- -GUGAAA--- 2281 UCU-GUUGAU --AUCU-G-G A-A-GA-CA- UUCG------ ---------- ---------- 2341 ---------- ------AUAG C-GAAA--GC A-ACAUCCG- -AUUCUG-A- --------UC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----AA-CG- CU---CAG-- -GUA---C-- UAAAGUAUGG 2641 G-GAUCAAA- UAGGAUUAGA GAC--CC-UA -GUAGUC-CA UACCUUAAAC AAU--GAG-- 2701 ---UG-UU-- -CAACGUCUU U-AA----UA UA-------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------GU CAA------- ---------- ---------- 2941 ---------- ---------- ---------- --UAUA--U- --UUAGGGGG UUU-AAAGC- 3001 ------UAAC ---------- -GCGUG-AAA CACUCCG-CC UGG-GGAAU- --GU---GGC 3061 C--GCAA-GG UC-UAA-ACU CAAAGGAA-U UGA------C GGUG-ACUUA ---UA-CA-- 3121 -AGGGGUG-G AGCAUGUGGU UUAAU-UCG- ACA-UACCG- --CGCA---- ------AAAC 3181 CUUA--CCAA UUUU------ ---------- -------UGU AUCUGGUU-- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------U CUUUUCGUUA GCCAUUUAUU UGGUUAGCCU 3481 UCUUCUUUCU GUUGAAGGUC UACUACGAUA UCGAUUGAAG AUGUGGGUGU UUCUAUGCGU 3541 AAGCAUGAUC UAGCUAUUUU CAAUUAACGG UAACCAA-UG AC-A------ ---AG-A-GC 3601 UGCA-UG-AU -U----GUCG -UAA------ GUUC--GU-G CC--GUGA-- -GGUGU---- 3661 ---------- ---------- ---UGGG--- --------UU CAUU------ -----CCA-U 3721 -------AA- -AC-GAAC-G CAAC-CCUUU ----UGAUUA -----GUUGC AU-AAUG-G- 3781 -AUGAA-AGU UUAAACUGGA UAUCC-AUGU UC-------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----ACU-A -GUUCAAC-- 4321 ---------- ---------- -----CAGCC CUUCUA---- -CCUU----U AGGG--AUUA 4381 AGG--ACAGG -----UCCA- ----C-GU-- C-A----AAU CAUUAU-GGC CUU------- 4441 ---------A AUAG-AUUGG -GCUAC---- ---------- ---------- -----ACAUG 4501 UGCUA-CAUU --GAUGAUC- GACAAC-AAG -----AA--- --GC----AA UGGC------ 4561 ---------- -GUGA----- ---------- ---GCC-UGA -----GC--- -----AAAU- 4621 ----C-UU-- UAAAA--GA- CAUU------ -------UCA GUC-CGAAU- -UGU--UC-- 4681 ---------- ---------- -UU-UG--AA ACUC--AA-- ---------- ---------- 4741 ------G-A- -GCA-U-G-- AAG-CCGGA- AUC-UCU-UG UA-AU-CGUG G-AUCAU--- 4801 ---UACG--C C-ACGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UAGUACA-A AA--GUCA-C GUACAGACC- 4921 GCCC-GUC-A UGCU-AUGGA A---ACU-AU -U-UGA-AGU -------AGA A--------- 4981 ----GU-U-- --AC-----A --AGG----- ---UU----U CAAU------ ---------- 5041 ---------- ---------- ---------- ---UGUUUCG AUAGACCACC -UUAUUGAAA 5101 GUUUUCAUAA GGCCUUGACA UUCU------ ---------- ---------- ---------- 5161 ---------- ---GUUGG-- C-------UU U------GU- ----ACAC-- ---------- 5221 GAC------U CUUUAUUUAG G--------G ACUGGAGUA- AAG-UCGAA- AC-AGGG--- 5281 -U-AGU--GG U--AGAAGAA UCU-G-CUGC UGGACCAUUA UUA....... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Parm.tet_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Paramecium tetraurelia (ciliate) -- mitochondrion. REFERENCE 1 AUTHORS Seilhamer,J.J., Olsen,G.J. and Cummings,D.J. TITLE Paramecium mitochondrial genes: I. Small subunit rRNA gene sequence and microevolution JOURNAL J. Biol. Chem. 259, 5167-5172 (1984) COMMENT Corresponding GenBank entry: K01751 legacy_attribute= divergent regions coincided with the gene boundaries. legacy_attribute= substitutions were somewhat clustered, and the two most legacy_attribute= transversions, and 9% insertions plus deletions. These legacy_attribute= nucleotide differences consisted of 53% transitions, 37% legacy_attribute= the two species (primaurelia and tetraurelia), and the legacy_attribute= [1] the overall rRNA gene sequence was 94% conserved between common_name= ciliate BASE COUNT 566 a 281 c 361 g 506 u 3728 others ORIGIN 1 .......... .......... .......... .......... .......... .........A 61 UUUUGCUGGU AGGCCAGCUC UUUAGUUGCA GCCANGCUGC AUACUUGGAU GUAAGAAUUC 121 UUUUUUAGGA GUGUGA-UCU UAGCUUUGAU -UUAACGCU- AAUCA-AAU- G--------- 181 ---------- ---------- ---------- ---------- CAUUA-CACA CGC-AA-GUU 241 UUAUU-UU-A CACAAGA-AC -CU----UCU -UCUUUGC-U UAAAAU-GCA AAGA-UCU-- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ----AGU-UU U-AA--AAU- -AGC--GUAU UGGUG--CGU AAAA-UAUGU -CUUUUU--- 481 -AUU--CGUA U---UG-U-A CCU-UA--G- -------AUA GG-------- C-----UAGG 541 U--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------UUU CUUCCUUUUA AGAAGUUUAA UGCCACCCAA 721 AAAAAAUUUU UUAAAAAAAU CGAUACUUAA GUAUUGAACU CUUUUUUUGA UC-------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- --------CA -AUAGG---- -AA---AAAA G-AUA-UA-- GAGC-----G 901 CUUCG----- ---------- ---------- AA-UUCG--A AGGG------ ---------- 961 --GGG----- ---------- -----CCACU -U-GGGCCUC CUGC-GCUUA --GCUG---A 1021 UUU-GUGA-G AAGAAUCAGC -CAC-AUACA GGUAUGUGAA A-G-ACCUUA UC-----UCG 1081 -----G---- -----ACA-G AAGUG-GGGA AUU-UUGGGC AA-UGCGC-- ------UUAA 1141 ---------- ---GCGUG-- --ACCCA-G- C-AA-AUU-G AU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GU-- 1261 ---------- ---------- ---------- ---------- ---------- ---------- 1321 ---------- ---------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- -----UGCGG AAGAAAAUAA GUGAGGGUGC CUUGCAGCAA 1441 UGUGGGAUAU GCCUCUUUG- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ------ACUU UUUUU---AA ACGCAGGCCA GAAACGAGUA 1561 UAAUUAAGCU AAGUUUUGUU AGAA------ ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- ---------- 1681 ------GCUA U--GGCCAA- UA--CAUGUG -CCAGCAGCC GC-GGUAA-U ACAU-GA--- 1741 -GUA-GCU-- AGCGUUAAUC -GUCCUUA-U UGAGC-GUAC AG-AGUGAGU C-GGCG---- 1801 ---------- ---------- ------GUCA UAACAAUUA- -AU----A-- ---------- 1861 ACUA------ -------UUU UU-------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- --------AU 1981 AU-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -------AAA AA-------- --GA------ 2101 -------U-- --AU----UA AUAAAAAGGA CUAGUGAUU- UUU-UUUUA- U-GUAAGU-- 2161 -----UGAG- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CUUG--UAAA --CUA-GUG- -AUAAAA--- 2281 UAC-AGGGAG --UUUA-C-A G-G-AA-CA- UUC------- ---------- ---------- 2341 ---------- ------GACG C-GAAA--GC G-ACUAACA- -AUUAAA-A- --------AA 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- CU---AUA-- -UCA---C-- GAAAGUAUAG 2641 G-UAAUGAA- AAGGCAUUUU AAA--CC-UA -GUAGUC-UA UACUGUAAAA GAU--GAG-- 2701 ---UA-UUU- ---------- ---------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ------AAUA CUAA------ ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---------- -------GU- 3001 ------UAAC ---------- -AC-AA-AAA UACUCCG-CU UGG-GUAGU- --AA---AGC 3061 C--GCAA-GU CA-GAA-ACU UAACAGAA-U UGG------C GGGG-ACUUG ---UU-CA-- 3121 -AACGGUG-G AGCAUGUGGU UUAAU-GCG- AUA-AUCCA- --CGUA---- ------AAAC 3181 CUUA--CCAG CGUUAAA--- ---------- -------UUU UU-UUC---- -U-------- 3241 ----UUAGUU A--A------ --------GC UUC------- --------A- UGGCUAA-A- 3301 -------AUU ---------- -----UUUA- ---------- -----GAA-- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- --AAAAA-G- AG-A------ ---UGGU-AU 3601 UGCA-UG-GC -U----GUCG -UCA------ GUUC--GU-G UU--UUGA-- -AAUUU---- 3661 ---------- ---------- ---AGAA--- --------UU AAGU------ -----UUUAU 3721 -------AA- -AC-GAAC-G CAAC-CCUUG ---------- -----UUUUG UA----U--- 3781 ---------- ---GUUUA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- -----A---- -UACAAAA-- 4321 ---------- ---------- -----UAAAU -GAUUA---- AGGAAU---U AUUCAUUUUA 4381 GCUA-GAAGG -----CUGA- ----A-GU-- CAA----AGU CCUUAC-GGU CUG------- 4441 ---------C GUAC-GCUGG -GCUAC---- ---------- ---------- -----ACACG 4501 UGUUA-CAAU --GGUAA--A AACAAU-AGA ----AAA--- --AC-----A -AAG------ 4561 ---------- CUCAAC---- ---------- ---CUU--UA -----GU--- ------U--- 4621 ----U-UU-- AAAAAA---U UACC------ -------ACA GUA-CGAAU- -UGU--UU-- 4681 ---------- ---------- -UC-UG--AA ACUU--GG-- ---------- ---------- 4741 ------A-A- -GCA-U-G-- AAG-AAGAA- AUC-GUU-AG UA-AU-CGCA A-AUAAG--- 4801 ---UAUG--N U-GCGGU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UAUAAGU-C AA--GUCC-U GCACACACU- 4921 GCCC-AUC-A CGCU-CAAAG A---GUU-UU -A-AAU---- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ----CUAGAA 5041 GCUGAAUUUA GGAUGUGACC CUACCCAUUU UUUUUUUUAA AAAAACUCGC -CGGUGCACC 5101 AA-ACACCGG UGUUCUAAAC AAGCU-ACUU GUUGUCAGCA CAAAGAAGAG UAAAGGCGAA 5161 ACC------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- --AUUUGAAA U--------G AUCGGAGUG- AAG-UUGAC- AC-AAGG--- 5281 -U-ACC--GG U--AUGGGAA CUU-G-CCGG UGGAGCAAGG UGAACAGACC AAUGCAUGCA 5341 CCCAGAACGG GGCGCGGUUA .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Tetr.pyr_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Tetrahymena pyriformis str. ST (ciliate) -- mitochondrion. REFERENCE 1 AUTHORS Schnare,M.N., Heinonen,T.Y.K., Young,P.G. and Gray,M.W. TITLE A discontinuous small subunit ribosomal RNA in Tetrahymena pyriformis mitochondria JOURNAL J. Biol. Chem. 261, 5187-5193 (1986) COMMENT Corresponding GenBank entry: M12714|g343462 (bases 783 to 990) Corresponding GenBank entry: M12714|g343462 (bases 1045 to 2451) common_name= ciliate isolate_name= ST NB: offset of 'GCA' at 1053r is intentional! BASE COUNT 579 a 206 c 300 g 530 u 3827 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .....AAAAA AAAUUAGGUU GUAAUCAAAA 121 AAUUUAUUGA GUGUGA-UCA UGGCUCGGGA -UUAACGCU- AAUUA-GAC- G--------- 181 ---------- ---------- ---------- ---------- CCUAA-CACA UGC-GA-GUU 241 UUAUAUAU-- -A--UUA-G- -AU------- --------AA CAAUUAA--- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ----AUC-UA A-AUG-UAU- -AGC--GUCA AGGUG--AGU AUA--AUACA UAAA-UA--- 481 -UGC--CUUU A---AG-C-C UAU-U----- -------UAA AU-------- ------AAUA 541 G--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- -------UUA AUUUUAAAAC AAUAACAAAU GCUAUAAUUA 721 UUAGCA---- ---------- ---------- ---------- ---------- ---------- 781 ---------- ---------- ---------- ---------- ---------- ---------- 841 ---------- ------G-CU -UAAAG---- -AU---UAAU U-UGU-AU-- -AAU-AUU-- 901 --A------- ---------- ---------- ---GGUAA-U UAUUUCUAAA AUUGUUUAAU 961 AAAUAAAUAU AUUUAUUUUU AGUAAAA-UA -A-GCC-UAG A---UGUUUA --GUUG---A 1021 AUU-UAGA-G AUUGUUCAAC -CAC-AUACG GGUAUGAAAA C-U-ACCCUA UC----UAUU 1081 U----G---- -----ACA-G CAGUG-AGGA AUU-UUGGAC AA-UAUGC-- ------GAAA 1141 ---------- ---GCAUG-- --AUCCA-G- C-GA-ACU-A AU-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GG-A 1261 AA-C---GAA GAA-GAUA-- -------GAC AA-------- --UAUU--GU AAA--G-UUU 1321 AGUGCG-AGA AUUAAC---- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ----AAAUGA 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------GUAU --AUUCU-AG 1681 -GAGAAGCUC U--GGCUAA- UA--CAUGUG -CCAGCAGCC GC-GGUAA-U ACAU-GA--- 1741 -GGA-GCG-- AGCGUUAUCC -AUAUUGA-C UGAGU-GUAU UA-AAUACGU A-GGAU---- 1801 ---------- ---------- ------GUU- -----AUAA- ---------- ---------- 1861 UU-------- -------ACU AC-------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ------UUUA AAAAUGUAAU 1981 AAAAACUAAA UACU------ ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -------GUA GU-------- -UAU-U---- 2101 ---------- --------UU AU---A--AA CAAU--AAU- UAU-AAU-UA A-GAGUAG-- 2161 -----GAGA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- CUUA--UAGA --ACA-ACG- -AUUAAA--- 2281 UGU-AGUUAC --ACUA-U-A U-A-GC-UA- GCCA------ ---------- ---------- 2341 ---------- ------UAAA C-UAAG--GU G-CUUCUCU- -AAUUAU-A- --------AU 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----UU-AU- CU---GAU-- -GUA---U-- GAAAGUACGG 2641 G-UAUCGAU- GAGGACUAGU CUC--CC-UA -GUAGUC-CG UACUGUAAAA GAU--GAA-- 2701 ---UA-CU-- -UUA--UGAA U-U------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------A CG-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---AAUUCAG -GA-AUAGC- 3001 ------UAAC ---------- -GC--A-AAG UAUUCUG-CU UGG-GGAGU- --AU---UAU 3061 C--GCAA-GA UU-AAA-ACU UAACUGAA-U UGG------C GGGA-AUUUG ---UU-CG-- 3121 -AACGGUG-G AACAUGUGGU UUAAU-GCG- AUA-AUCCA- --CGCA---- ------AAAU 3181 CUUA--CCAA CGUUUUAG-- ---------- --------GC UU-UA----- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ------UCUA 3361 GUAAUAUGGU ----UAAC-- ACUAUAAUUA UGUAG----- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ----UAA-A- GUA------- ---CGGA-AU 3601 U-GCAUG-GC -U----GUCG -UCA------ GUUC--GU-G CU--GUGA-- -AGUUU---- 3661 ---------- ---------- ---AGGA--- --------UU AAGU------ -----UCU-U 3721 ------UUUA -AC-GAAU-G CAAC-CCUA- ---------- ---------- ---------- 3781 ---------- ---------- ---------- --UAAAUAAG UCUUUAAUAA GUAUUAAAUG 3841 UUUAUAUUUA UUAUUCUUGU UUAAUCUAUA UCCGGGUAUA UCGAAGUAAU AUUU----UG 3901 UAUACCUGAA UAUAGGGGUU U--------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---------- 4321 ---------- ---------- ---------- ---------- ---------- ---------- 4381 ------UAGG -----CUGA- ----A-GU-- C-A----AGU CCCUA-UGGU CUU------- 4441 ---------U AUAC-GUUGG -GCUAC---- ---------- ---------- -----ACACG 4501 UGUUA-CAAG --GGUAAAA- -ACAAA-GAG -----AC--- --GC----AA UAGA------ 4561 ---------- -GUAA----- ---------- ---UCU-GGA -----GC--- -----AAAA- 4621 ----C-UC-- -UAAA--AAU UACC------ -------UCA GUU-CAGAU- -UGU--CU-- 4681 ---------- ---------- -CA-UG--AA AUUC--UG-- ---------- ---------- 4741 ------A-G- -GCA-U-G-- AAG-AUGAA- AUC-GUU-AG UA-AU-UGUA A-AUUAA--- 4801 ---AAUG--U U-ACAGU-GA AA-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UAUUAGU-C AA--AUUU-U GCACACACC- 4921 GCCC-AUC-A CGCU-CGGAA A---GUC-AA -U-AUU-AG- ---------- ---------- 4981 ---------- ---------- ---------- ---------- ---------- ---------- 5041 ---------- -CGGAAGAUU UGAAAAUCUC UACGGAAUAA UAAAUUUAAU -AUUAAUUUA 5101 UUAGUCAUUA UGUUUUUUUU UAACGCUGUG GAUGGAAAGU AGUAUCUAAU ---------- 5161 ---------- ---------- ---------- ---------- ---------- ---------- 5221 ---------- CUAAUAUUGG U--------A AUCUGAGUG- AAG-UUGAC- AC-AAGG--- 5281 -U-ACU--GG U--AGGGGAA CCU-G-UUGG UGGAAUAUAU UAUUAU.... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Plas.fal_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Plasmodium falciparum str. C10 (malarial parasitic protozoan) -- mitochondrion. REFERENCE 1 AUTHORS Gardner,M.J., Bates,P.A., Ling,I.T., Moore,D.J., McCready,S., Gunasekera,M.B., Wilson,R.J. and Williamson,D.H. TITLE Mitochondrial DNA of the human malarial parasite Plasmodium falciparum JOURNAL Mol. Biochem. Parasitol. 31, 11-18 (1988) COMMENT Corresponding GenBank entry: M23443|g343059 common_name= malarial parasitic protozoan isolate_name= C10 BASE COUNT 376 a 91 c 132 g 336 u 4507 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... ........AA 1141 ---------- ---GCUUG-- --AUAAA-G- U-AA-UAU-U UC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------UU-U 1261 UA-G---GAA GAC-AGUAUU --------AU UAA------- AAUAUU--GU AAA--C-UUU 1321 -UUAUU-UUA UU-------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- -----UUUA- ---------- ---AAUAUUG 1501 A--------- -------UAA A--------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- --AAUAA--A 1681 -AAAUAGUAU U--UGCUAU- U--UUCUGUG -CCAGCAGCA GC-GGUAA-U ACAG-AA--- 1741 -A-U-GCA-- AGCGUUAUUC --AUUUUA-U UAGGC-GUAA AG-CGUUUUA A-GGUU---- 1801 ---------- ---------- ------UUA- -----UAUU- AAU----UUU AU-------- 1861 ---------- -------GUU UAAAU----- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ----AUUUAA 1981 AUUAA----- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ----AUUUAA AA-------U AAAUUA---- 2101 --A-UAAA-U A-AU----AA UA------UA AUAG--AGU- AUU-AUAAA- A-GUAUUA-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUUU--UUGA --GAA-GUA- -GUGAAA--- 2281 UAC-AAUGAU --ACAA-A-A A-A-GA-AU- AUCA------ ---------- ---------- 2341 ---------- ------AAGG C-GGAA--GC A-UAAUACU- -AUAUAA-UU --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CA- CU---UAA-- -AAA---C-- GAAAGCUAAG 2641 G-UAGCAAA- UAGGAUUAGA UAC--CC-UA -GUAGUC-UU AGCUGUAAAC UAU--GAA-- 2701 ---UA-UU-- -UUA--UAUU U-AU----A- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------U UU-------- ---------- ---------- 2941 ---------- ---------- ---------- -----U---- --AUAAAUA- -UA-AUAAC- 3001 ------UAAC ---------- -GUGAU-AAA UAUUCCG-CC UGA-GUAGU- --AU---AUU 3061 C--GCAA-GA AU-GAA-AUU CAAAGGAA-U UGA------C GGGA-GCUUA ---UA-CA-- 3121 -AGUGGUG-G AACAUGUGGC UUAAU-UCG- AUG-CAACA- --CGAU---- ------AAAC 3181 CUUA--CCAA AAUUUAACA- ---------- -------AUA UU-UUU---- AA-------- 3241 ----UAUUAA ---------- --------GA AA-------- ---------- -UUAAUA--- 3301 ---------- ---------- ----UUUUAA U--------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---AAAAUA- UA-U------ ---AGGU-AG 3601 UGCA-UG-GC -U----GUCG -UCA------ GUUC--GU-G CU--GUGA-- -AGUGU---- 3661 ---------- ---------- ---UAAU--- --------UU UAGU------ -----AUU-A 3721 -------UA- -AC-GAAC-G UAAC-CUUUU ---------- -----AUAAA AA-------- 3781 ---------- -----AAA-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- -UUUUUAU-- 4321 ---------- ---------- ---------- ---------- AAUAA----- ------AUAA 4381 UAA--UAAAG -----AUUA- ----C-GU-- C-A----AGU CAUUAU-GCU CCU------- 4441 ---------U AUAU-UUUGG -GCUGC---- ---------- ---------- -----UCACG 4501 UGUUA-CAUA --AAAUAU-- UACAAU-AUU ---------- --UU------ -AUUAUAU-- 4561 ---------- -GUUA----- --------AA UAUAAU---- -----AA--- -----UUAA- 4621 ----A-AU-- --------AU AUUU------ -------AUA GUU-CAGAU- -UAU--AA-- 4681 ---------- ---------- -AU-UG--AA ACUC--AU-- ---------- ---------- 4741 ------U-U- -AUA-U-A-- AAG-AUGGA- AUC-ACU-AG UA-AU-CGCU A-AUCAG--- 4801 ---AAUUA-U A-GCGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -AAGUUCU-U AA--GCUU.. .......... 4921 .......... .......... .......... .......... .......... .......... 4981 .......... .......... .......... .......... .......... .......... 5041 .......... .......... .......... .......... .......... .......... 5101 .......... .......... .......... .......... .......... .......... 5161 .......... .......... .......... .......... .......... .......... 5221 .......... .......... .......... .......... .......... .......... 5281 .......... .......... .......... .......... .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Chdr.cri_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Chondrus crispus (red alga (=carragheen)) -- mitochondrion. REFERENCE 1 AUTHORS Leblanc,C., Kloareg,B., Loiseaux-deGoer,S. and Boyen,C. TITLE DNA sequence, structure, and phylogenetic relationship of the mitochondrial small-subunit rRNA from the red alga Chondrus Crispus (Gigartinales, Rhodophytes) JOURNAL J. Mol. Evol. 41, 196-202 (1995) COMMENT Corresponding GenBank entry: Z30950|g602494 (bases 34 to 1409) common_name= red alga (=carragheen) BASE COUNT 500 a 184 c 269 g 423 u 4066 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......AUA 121 UAAUAAAAGA GUUUGA-UCC UGGCUCAGAA -UGAACGCU- AGUGG-UUA- G--------- 181 ---------- ---------- ---------- ---------- CUUAA-CACA UGC-AA-GCU 241 AAAAU-UU-- ----UUU-A- -U-------- ---------- -UAGUU---- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 -----AU-AA A-AUU-AGU- -AGC--GAAC GGGUG--AGU AAU--GCAUA -AAAAUU--- 481 -AAC--CUUA A---AA-A-- ---------- ---------- ---------- ---------- 541 ---------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AU----UG 781 U--------- ---UAAAU-- ---------- -ACAUUUAA- ---AAU---- ---------- 841 UAA------- ---AUUG-UU -UUAAG---- -AA---AAGU U-UAU-GU-- -AAG-AUU-- 901 --A------- ---------- ---------- ---AGUUG-U UGGUAAU--- ---------- 961 UUAAUAG--- ---------- AG--UAC-CA -A-GCU-UAC GA--UCUUUA --GUUG---G 1021 UCU-AUGA-G GAUGAACAGC -CAC-AUU-G GAACUGAGAU ACG-GUCCAA ACUUA-AUUA 1081 --AAAG---- -----GCA-G CAGUG-AGGA AUA-UUGGGC AA-UGGGU-- ------GAAA 1141 ---------- ---GCUUG-- --ACCCA-G- C-UA-AAC-C AC-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AA-G 1261 UG-U---GAU GAA-AGUA-- ---------A AA-------- --UACU--UU AAA--A-CAC 1321 -UUUUU-UAA AA---U---- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- ---------- ---------- ---AAAUAAU 1501 G--------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------A--- --UUUUAAUA 1681 -AAAUAGUCC U--GGCUAA- U---UUCGUG -CCAGCAGCC GC-GGUAA-A ACGG-GA--- 1741 -AGG-GCA-- AGCGUUAUUC -GGAUUAA-U UGGGC-GUAA AG-AAUACGU A-AGUU---- 1801 ---------- ---------- ------GAA- -----AAUC- CAA----UUU UAAG------ 1861 ---------- -------AUA AAUU------ ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- --------UU 1981 AA-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- -----AGUUU AU-----UUU UAAUUAA--- 2101 UUU-AAAA-A A-UU----AA UU------UU CUAG--AGU- UUAAAGAGA- A-GAUUAU-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UUUU--AAGU --GUA-ACG- -GUAAAA--- 2281 UGU-UUUGAU --ACUU-A-A A-A-GA-AU- UUCA------ ---------- ---------- 2341 ---------- ------ACAG C-GAAA--GC A-GUAAUCU- -AAAAUA-AA --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CA- CU---GAG-- -GUA---U-- UAAAGUGUGG 2641 G-UAGCGAA- AGGGAUUAGA UA---CC-CU -GUAGUC-CA CACCCUGACG AU---AAG-- 2701 ---UG-UU-- -CAU--UUUG G-A------- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- ---------G AU-------- ---------- ---------- 2941 ---------- ---------- ---------- ---------- ---UCAGAA- -AU-GUAGC- 3001 ------UAAC ---------- -GUGUU-AAA CACUUCG-CC UGG-GAACU- --AC---GAU 3061 U--GCAA-AA UU-AAA-ACU CAAAGGAA-U UGA------C GGGG-ACUUA ---CA-CA-- 3121 -AGCAGUG-G AGCAUGUGGU UUAAA-UCG- ACA-AUCCG- --CGCA---- ------AAAU 3181 CUUA--CCAA UUUUU----- ---------- -------GUA -U-AAU---- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ----UAUA-- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---AUUAAU- UA-C------ ---AGGU-GU 3601 UGCA-UG-GC -U----GUCG -UCA------ GUCC--GU-G CU--GUGA-- -AGCGU---- 3661 ---------- ---------- ---UUGG--- --------UU CAUU------ -----CCA-A 3721 -------UAA -AC-GGAC-G AAAC-UCUUA ---------- -----UAUAU U--------- 3781 ---------- ----UUUG-- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- --AAUAUA-- 4321 ---------- ---------- -----AACUG -CUAAA---- GAUAU----C UUGG--AGGA 4381 AGG--UAAGA -----AUGA- ----C-GU-- C-A----AGU CCUCAU-GAC CCU------- 4441 ---------A AUAA-AUUGG -GCUAC---- ---------- ---------- ---UUUCAUG 4501 UGCUA-CAAU --AAUUUU-- UUCAAA-AAG -----UA--- --GC----AA A-AAC----- 4561 ---------- -GUGA----- ---------- ---GUU-UUA -----GC--- -----AAAC- 4621 ----C-UU-- UUAAAC--AA AAUU------ --------AU AUU-CGGAU- -UAU--UU-- 4681 ---------- ---------- -UC-UG--AA AUUC--GA-- ---------- ---------- 4741 ------A-A- -AUA-U-G-- AAG-UUGGA- AUU-GCU-AG UA-AU-CGUA A-AUUAG--- 4801 ---AAUG--U U-ACGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- -UUGUUCU-U AA--GUCU-U GUACACACC- 4921 GCCC-GUC-A CGCU-AUGGA A---AUU-CU -U-UUU-GCU -------UGA ---------- 4981 ----AAAA-- --UGU----- ---------- ---------- ---------- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --------UU 5101 A--------- ---------- ---------- ---------- ---------- ---------- 5161 ---------- ---------- ---------- ------ACA- ---AUUUU-- ---------- 5221 -AU------A GU-AAAAGAA A--------A ACUGGAGUG- AAG-UCGUA- AC-AAGG--- 5281 -U-AGC--CG U--AGGGGAA CCU-G-CGGC UGGAAAAUAA UUAAAUAUUU .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Emrc.nid_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Emericella nidulans (ascocarp fungus) -- mitochondrion. REFERENCE 1 AUTHORS Koechel,H.G. and Kuentzel,H. TITLE nucleotide sequence of the aspergillus nidulans mitochondrial gene coding for the small ribosomal subunit rna: homology to e.coli 16s rrna JOURNAL Nucleic Acids Res. 9, 5689-5696 (1981) COMMENT Corresponding GenBank entry: V00653 (bases 1 to 1437) legacy_attribute= basionym:Sterigmatocystis nidulans anamorph= Aspergillus nidulans common_name= ascocarp fungus BASE COUNT 500 a 208 c 300 g 429 u 4005 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 AAAAUUUUGA GUUUGA-UGA UGGCUCUGAU -UGAACGCU- GUCCA-AGU- A--------- 181 ---------- ---------- ---------- ---------- CUUGA-CACA UGC-UA-AUC 241 GAACG-AC-- ----UA--A- -UUAGUU--- ---------- -AUUA----- ---------- 301 ---------- ---------- ---------- ---------- ---------- ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 AACUAAG--U A-GU--AGU- -GGU--GUAC AGGUG--AGU AAAA-GAUAA -UUUGGC--- 481 -UAC--CUUA A---AG-U-A A----G--GG GA-----AAA A------UCC C--------U 541 U--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AUAAAA-- 781 ---------- ---------- ---------- ----AGAAA- ---GGA---- ------AAAA 841 GAAGG----- ---UCCG-CU -UUAAG---- -AU---GUUA A-UUA-UU-A UCAC-GGU-- 901 --G------- ---------- ---------- ---AGUAG-U AGUAAAG--- ---------- 961 GUAAUGA--- ---------- CU--UUA-CU -A-GCU--AA A---UCCGUA --GUCGU--G 1021 ACU-GAGA-G GUCGAUCGAC -CAC-AUU-G GGUCUGAAAA AA--CCCCAA UGC--GUUUU 1081 A---GU---- -----ACA-G CAGUG-AGGA AUA-UUGGUC AA-UGGCC-- ------GAAA 1141 ---------- ---GGC-G-- --AACCA-G- U-AA-CUU-G GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------AG-A 1261 AU-G---AAA GUG-UAUU-- -------AUA AU-------- --AAUA-CAA UAA--CGAUU 1321 -AUAUC-GUA UA-------- ---------- ---------- ---------- ---------- 1381 ---------- ---------- ---------- ---------- ---------- ---------- 1441 ---------- ---------- ---------- --------AA AUU---CUAA AUAGAAUAAU 1501 GAUAAUGAC- ---AAUUU-- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ---------- --UCUAU-UU 1681 --AUAAGUCU U--GACCAAA C---UACGUG -CCAGCAGUC GC-GGUAA-U ACGU-AG--- 1741 -AAG-ACU-- AGUGUUAAUC -AUCUUUA-U UAGGU-UUAA AG-GGUACCU A-GACG---- 1801 ---------- ---------- ------GUA- -----AAU-- UAA------- ---------- 1861 ---------- -------ACU C--------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- -------UAA 1981 AU-------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- --------GA GU-------- ---------- 2101 ---------A C-UU-----A UU------UA CUAG--AGU- UUUAUGU-A- A-GAAGGA-- 2161 -----AGAA- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- GCUC--UGGA --GUA-GUG- -AUAUAA--- 2281 UAC-GUAUAU --ACCA-G-A G-A-GA-CU- GGUA------ ---------- ---------- 2341 ---------- ------ACGG C-GAAG--GC A-UCCUUCU- AUGUAAA-A- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- UU---GAG-- -GGA---C-- GAAGGCUUGG 2641 G-UAGCAAG- AAGGAUUAGA UAC--CC-UA -GUAGUC-CA AGCAGACAAU GAU--GAA-- 2701 ---UG-UC-- -AUA--GACU A-GA-AAAAG UC-------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------GU UUA------- ---------- ---------- 2941 ---------- ---------- ---------- --GACUAUAA A-UUUAGUC- -UA-UAAAU- 3001 ------GAAA ---------- -GUG-U-AAG CAUUCCA-CC UCA-AGAGU- --AA---UAU 3061 G--GCAA-CA UA-UAA-ACU GAAAUCAU-U AGA------C CGUU-UCUGA ---GA-CC-- 3121 -AGUAGUG-A AGUAUGUUAU UUAAU-UCG- AUG-AUCCG- --CGAA---- ------AAAC 3181 CUUA--CCAC AGUUUGAAUA UUUUAC---- ---------- ---------- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- ---------- ---------- ---------- ---------- ---------- 3481 ---------- ---------- ---------- ---------- ---------- ---------- 3541 ---------- ---------- ---------- ---------- ---------- ---AAGC-GC 3601 UGCA-CG-GC -U----GUUU -UUA------ GUUA--AU-G UC--GUGA-- -GAUCU---- 3661 ---------- ---------- ----GG---- --------UU AAGU------ ------CC-- 3721 ------UUUA -AU-UAAC-G AAAA-CCCU- ------C--- -----ACUUU AU-------- 3781 ---------- --UUGCAUUU ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- -AUAAAGU-- 4321 ---------- ---------- -----UGAUC -GCC-----U UUAUAUU--- -GGU-UAGAU 4381 AAU---AGGG -----AUUA- ----A-GA-- C-A----AGU CAUCAU-GGC CUU------- 4441 ---------A AUAC-UGUGG -GCUAU---- ---------- ---------- -----AGACG 4501 UGCCA-CAUA --UGCCUUU- -ACAAA-GGG -----AU--- --GC----GA UUUU------ 4561 ---------- --GUG----- ---------- ---AAA-UUG A----GC--- -----UAAU- 4621 ----C-CC-- CCAAA--AAA GGAU------ -------AUA AUA-UGGAU- -UGU--AG-- 4681 ---------- ---------- -UC-UG--UA ACUC--GA-- ---------- ---------- 4741 ------C-U- -ACA-U-G-- AAU-AAGGA- AUU-ACU-AG UA-AU-CGUG A-AUCACC-- 4801 ---AUCG--U C-ACGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --UAAAAA-U CA--GCUG-G GUACUAACC- 4921 ACUC-GUC-A GGCG-CUGAA A---GAA-GU AU-GUG-CA- -------AGA A--------- 4981 ----GUUU-- --GA------ --UUUA---- CUUAUAUU-U AUAAUAUAUA UAA------- 5041 ---------- ---------- ---------- ---------- ---------- -------UCA 5101 G--------- ---------- ---------- ---------- ---------- ---------- 5161 -----UUAUA UAUAUUUA-- -------UAA G------UU- ----AAAU-- --------UU 5221 UCGCA----- UGCAUGACUU U--------G AUUGGUGUU- AAG-UCGAA- AU-AUGG--- 5281 -U-UCG--UG U--AAUGGAA AUU-G-CACG GGAUGAAUUA .......... .......... 5341 .......... .......... .......... .......... .......... .......... 5401 .......... .......... .......... .......... .. // LOCUS Neur.cr2_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Neurospora crassa str. 74-OR23-1A FGSC 2489 (red bread mold; ascomycete fungus) -- mitochondrion. REFERENCE 1 AUTHORS Chiang,C.C., Kennell,J.C., Wanner,L.A. and Lambowitz,A.M. TITLE A mitochondrial retroplasmid integrates into mitochondrial DNA by a novel mechanism involving the synthesis of a hybrid cDNA and homologous recombination JOURNAL Mol. Cell. Biol. 14 (10), 6419-6432 (1994) COMMENT Corresponding GenBank entry: L33367|g495655 (bases 1 to 1971) common_name= red bread mold; ascomycete fungus isolate_name= 74-OR23-1A NB: identical to Neur.cr4_M except for 3' end BASE COUNT 645 a 307 c 423 g 596 u 3471 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .....GAUGU AAUAAAAAAA AUUUUUUUUA AUUUUAUAUU ACAUCAAUAA 121 AAAUAGAUGA GUUUGG-UGA UGGCUCUGAU -UGAACACU- GUUCA-AAU- A--------- 181 ---------- ---------- ---------- ---------- CUUGA-CACA UGC-UA-AUC 241 GAACG-UU-- ----UA--A- -UU------- ---------- ---------- --------UU 301 UGGCCUAAGA AAGGGGUUUC AUCGUGGCUU AAGCUAAGGG GUUUAUUGUG GCUUAAGCUA 361 AGGUUUAAUC UUUGACUUAA GCGGGUGUUU UAGGGGAACU UGUGCCCCUA AAACCUCUU- 421 ----AAU--U A-AA--AGU- -GGU--GUAC AGGUG--AGU AU---AAUAU -UUUUUC--G 481 CUUAA-CUUA A---AG-U-G AAG-G----- -------CAA AU-------- ------CCUU 541 C--------- ---------- ---------- ---------- ---------- ---------- 601 ---------- ---------- ---------- ---------- ---------- ---------- 661 ---------- ---------- ---------- ---------- ---------- ---------- 721 ---------- ---------- ---------- ---------- ---------- --AUAUUGCA 781 AAAGG----A UAUCUUAGGC A------CCU GUUG--AAA- ---GGG---- G-CCUA-CUU 841 AUAU-UA--- -UAUCCG-CU -UUAAG--AG GAUGA-GAAA A-GUU-UC-- -AGA-GAU-- 901 --A------- ---------- ---------- ---GGUAG-U UGUUAAG--- ---------- 961 GUCAUGG--- ---------- CU--UAA-CA -A-GCC-AAU AA--UUCUCU UAGUCGA--A 1021 GCU-GAAAAG GCUGAUCGAC -CAC-AUU-G GGAAUGAAAA AA--UCCCAA GGC--AAAUA 1081 G---GU---- -----ACA-G CAGUG-AGGA AUC-UUGGUC AA-UGGGC-- ------CCAC 1141 ---------- ---GCCUG-- --AACUG-G- U-AA-CUU-G GA-------- ---------- 1201 ---------- ---------- ---------- ---------- ---------- ------GG-A 1261 AU-GA--GGG GUC-AACU-- U------UGC AAAU------ --GGAU-GAG UGA-UC-GUU 1321 -AGAAG-AUC CUUAGU---- CCCCUGGUCU UCUUGACACA UGAGGUAUAU ACUUCUAGUC 1381 CAUAUUGGGG GGAGACUCCA CGUCGAUUUA UCGAGUAAAA UUCUGUAUAC AUAUUGGAUA 1441 AUG------- ---------- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- ---------- ------ACAA --UAUGU-AC 1681 --AUUUGUCU U--GACUAA- U---UACGUG -CCAGCAGUC GC-GGCAA-U ACGU-AA--- 1741 -GAG-ACU-- AGUGUUAAUC -AUCAUAA-A UAGGU-UUAA AG-GGUACUC A-GACG---- 1801 ---------- ---------- ------GAA- -----AAAU- -------UCG CCC------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ------AAAU 1981 AUA------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -GG-G-GA-C A-------AU UU------UU CUAG--AGU- UUUAUGU-A- A-GAAGGUC- 2161 -----GUAC- ---------- ---------- ---------- ---------- ---------- 2221 ---------- ---------- ---------- UCUA--GAGU --GGA-GAG- -AUAAAA--- 2281 UUC-UGUGAU A-CCUA-G-G G-G-AC-GG- GUAA------ ---------- ---------- 2341 ---------- ------A-GG C-GAAG--GC A-AUCUUUU- AUGUAAA-A- --------AC 2401 U--------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ----GA-CG- UC---GAA-- -GGA---C-- GAAGGCAAAG 2641 G-GAACAAA- AAGGAUUAGA UAC--CC-CA -GUAGUC-UU UGCAGACAAU UAU--GAA-- 2701 ---UG-CC-- -AUA--GGUU A-GA----U- ---------- ---------- ---------- 2761 ---------- ---------- ---------- ---------- ---------- ---------- 2821 ---------- ---------- ---------- ---------- ---------- ---------- 2881 ---------- ---------- --------UU UUA------- ---------- ---------- 2941 ---------- ---------- ---------- -----A---- --UUUAGUC- -UA-UAAAU- 3001 ------GAAA ---------- -GUG-U-AAG CAUUUCA-CC UCA-AGAGU- --AA---GGC 3061 G--GCAA-CG CA-GGA-ACU GAAAUCAC-U AGA------C CGUU-UCUGA ---CA-CC-- 3121 -AGCAAUG-A AGUAUGUUAU UUAAU-UCG- GUG-ACCCA- --CGAA---- ------AAAC 3181 CUUA--CCAC AAU-UGAA-- ---------- -------UAU UA-AUAA--- ---------- 3241 ---------- ---------- ---------- ---------- ---------- ---------- 3301 ---------- ---------- ---------- ---------- ---------- ---------- 3361 ---------- ---------- ---------- ---------- ---------- ---------- 3421 ---------- --UAAUGAUA UUAUUUUUUA UGCUUGAUAU GGCAAGCACU CAAUUUUCCC 3481 CUCCCCGUAG GUUUGCCGCG GGGGGGGAGA AAAAAGAAAA AUAAUGGAUA AUAUAGUAAA 3541 UACCAUAUUC CAACUAUAUU UAA------- --UUAUU-A- AUAC------ ---AAGU-GU 3601 UGCA-CG-GC -U----GUCU -UCA------ GUUGA-UG-U UG--CGAAA- -CUGUGG--- 3661 ---------- ---------- ---UUCG--- ---------U UCCA------ -----UGG-A 3721 -----AUUAA -CG-UAA--A CCCU-UGCUU -----UA--- -----UUUGU ---------- 3781 ---------- --AAAUAUU- ---------- ---------- ---------- ---------- 3841 ---------- ---------- ---------- ---------- ---------- ---------- 3901 ---------- ---------- ---------- ---------- ---------- ---------- 3961 ---------- ---------- ---------- ---------- ---------- ---------- 4021 ---------- ---------- ---------- ---------- ---------- ---------- 4081 ---------- ---------- ---------- ---------- ---------- ---------- 4141 ---------- ---------- ---------- ---------- ---------- ---------- 4201 ---------- ---------- ---------- ---------- ---------- ---------- 4261 ---------- ---------- ---------- ---------- ---------- ---AUAAA-- 4321 ---------- ---------- ---GCAGUUC ACCU------ UUAUAU---- -AGGAAAUGA 4381 UAA--AAGGG -----AUC-- ----A-GA-- C-A----AGU CAUCAU-GGC CUA------- 4441 ---------A AUAU-UGUGG -GCUAU---- ---------- ---------- -----AGACG 4501 CGCCA-CAUU --UUCCUAA- -ACAAA-GAG AU--GCA--- --AA------ -AAU------ 4561 ---------- -GUGA----- ---------- ---AUU---- -----UU--- ----AGCUA- 4621 --AUC-UC-- AAAAA--AUA GGAU------ --AAAAAUAU ACA-AGGAU- -UGU--AG-- 4681 ---------- ---------- -UC-UG--AA AUUCG-GA-- ---------- ---------- 4741 ------C-U- -GCA-U-G-- AAU-AAGAA- AUU-GCU-AG UA-AU-CGUG A-AUCAC--- 4801 ---CAUG--A C-ACGGU-GA AU-------- ---------- ---------- ---------- 4861 ---------- ---------- ---------- --AUUCCC-U CG--GAUU-G GUACUAACC- 4921 ACUC-GUC-A CAUG-CUGAA A---GGA-GU ---GCG-UG- ------CAAU AA-------- 4981 ----GUUU-G C-UUU----U C-UAU----- ---------U AUAAGU---- ---------- 5041 ---------- ---------- ---------- ---------- ---------- --AAGUAGAC 5101 AUAUAG---- ---------- ---------- ---------- ---------- ---------- 5161 ---------- -GUUUAGA-U GUU-----AU A-----AUA- ----GGAU-- --------CC 5221 UUCGUA---- UGCGCGGCUC U--------G AUUAGUGUU- AAG-UCGAA- AU-ACGG--- 5281 -U-UCG--UG U--AGUGGAA GUU-G-CACG GGACUUAUCA AUGUUGAACA AUACGAUUGG 5341 AUAUACACCC CUUGGGUUCG UGGCGAAAAU UGCCUCGUUC CAUUUUAUAG GGAAAAUAUA 5401 UCCUUAUGUA UAUAUUCUUU AUUUUAAAGU AUAUAUAUAU AA // LOCUS Sacc.cer_M 5442 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomyces cerevisiae (brewer's yeast; baker's yeast) -- mitochondrion. REFERENCE 1 AUTHORS de Zamaroczy,M. and Bernardi,G. TITLE The primary structure of the mitochondrial genome of Saccharomyces cerevisiae-a review JOURNAL Gene 47, 155-177 (1986) COMMENT Corresponding GenBank entry: M62622|g343773 (bases 25428 to 27097) common_name= brewer's yeast; baker's yeast NB: complete genome compiled from many strains and GB entries BASE COUNT 697 a 154 c 222 g 597 u 3772 others ORIGIN 1 .......... .......... ........