Going global with phylogeny: the tree-for-all hackathon

Earlier this year, the Open Tree of Life project made the first public release of its synthetic tree of 2.5 million species (from ~4000 source trees), and announced a web services API (Application Programming Interface) providing programmatic access to a continually updated set of resources:

  • synthetic tree covering millions of species
  • a database of thousands of source trees
  • reference taxonomy used to align names from different sources

Tree-for-All participants convene to hear a report from a hackathon team

The API release was timed to coincide with our open call for participation in a “Tree-for-all” hackathon, which took place September 15 to 19 (2014) at University of Michigan, Ann Arbor.  The hackathon— organized and funded by OT, the Arbor workflows project and NESCent’s HIP (Hackathons, Interoperability, Phylogenies) working group (Stoltzfus and Pontelli, PIs)— aimed to build capacity to leverage OT’s resources, making expert phylogenetic knowledge more accessible to scientists, educators, and the public.

To find out more about the hackathon, go to Open Tree’s blog (click on the “tree-for-all” tag), where I am guest-blogging about it.  Using web services to make phylogenetic knowledge more accessible is the theme of the Phylotastic project described by Stoltzfus, et al. 2013.